Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F60 I1 R1 18 148.4 5087586 98.9% 5031622 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,815,883 +C coding (667/687 nt) rph ← truncated RNase PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,815,8791.C96.5% 309.5 / 2.2 88coding (671/687 nt)rphtruncated RNase PH
Reads supporting (aligned to +/- strand):  ref base . (3/0);  new base C (29/55);  total (33/55)
Fisher's exact test for biased strand distribution p-value = 4.68e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 108 total aligned reads displayed.

TCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑C‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC  >  NC_000913/3815740‑3816012
                                                                                                                                               |                                                                                                                                      
tCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑at‑t                                                                                                                                         <  2:2272064/140‑1 (MQ=255)
 cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑at‑t‑c                                                                                                                                       <  1:2334317/140‑1 (MQ=255)
 cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑at‑t‑c                                                                                                                                       <  2:2458098/140‑1 (MQ=255)
 cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑at‑t‑c                                                                                                                                       <  2:164962/140‑1 (MQ=255)
     aaaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCTCCGCCTTATGCGTCGCTACAACGGATTCG‑AT‑T‑c‑cccc                                                                                                                                  >  1:945020/1‑139 (MQ=255)
      aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 <  1:522568/140‑3 (MQ=255)
      aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 <  2:1269366/140‑3 (MQ=255)
      aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 <  2:1576883/140‑3 (MQ=255)
      aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 <  2:1618120/140‑3 (MQ=255)
      aaCTGGCGCTGATATGGATTCACGCCTTCGCTCCTCATCCTACTTTTCCACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTATAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 <  2:723870/140‑3 (MQ=255)
           gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGc                                                                                                                             <  1:1458332/140‑1 (MQ=255)
            cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGcc                                                                                                                            >  2:161994/1‑140 (MQ=255)
                gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCagag                                                                                                                        <  1:1592889/140‑1 (MQ=255)
                gATATGGTTTCATGCATTCGCTGCTCATCATACTTTTATACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCagag                                                                                                                        <  1:1233517/140‑1 (MQ=255)
                 atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATCCG‑ATCC‑C‑CCCTCGTGCCAGAGc                                                                                                                       >  2:1131537/1‑140 (MQ=255)
                   atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCca                                                                                                                     <  1:1471784/140‑1 (MQ=255)
                   atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCAACAAAC‑AAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCca                                                                                                                     <  2:1080855/140‑1 (MQ=255)
                     ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCcaac                                                                                                                   >  1:2016988/1‑140 (MQ=255)
                      gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCcaaca                                                                                                                  >  1:363418/1‑140 (MQ=255)
                      gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCcaaca                                                                                                                  <  1:1641953/140‑1 (MQ=255)
                      gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCcaaca                                                                                                                  <  1:604942/140‑1 (MQ=255)
                      gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCCTCTGCGTCACTAAAATCGATTCG‑ATAC‑C‑CCCTCGGGCCAGAGCcaaca                                                                                                                  >  2:1018463/1‑140 (MQ=255)
                       tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 >  1:1898704/1‑121 (MQ=255)
                       tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑c‑cccct                                                                                                                                 <  2:1898704/123‑3 (MQ=255)
                        ttCATGCCTTCGCTCTTCATCTTACTTTTCTACAGAC‑TAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAg                                                                                                                <  1:800543/140‑1 (MQ=255)
                           aTGGCTTCGCTCCTCACCTTACTTTTCTACAGAC‑AAAAAAACGCCGACTCATCAGTCGCCTTAAAAATCAGTTTCCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑CTCCCTCGGGCCAGCGCCAACAAGATg                                                                                                             >  2:1262362/1‑140 (MQ=255)
                           aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATg                                                                                                             >  2:2145683/1‑140 (MQ=255)
                           aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATg                                                                                                             >  1:438632/1‑140 (MQ=255)
                           aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATg                                                                                                             >  1:324204/1‑140 (MQ=255)
                           aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑CGCCATCGGGCCAGAGCCAACAAGATg                                                                                                             >  1:1243143/1‑140 (MQ=255)
                             gCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAg                                                                                                           >  1:2288405/1‑140 (MQ=255)
                                ttCGCTCCTCATCTTTCTTTTCAACAGAC‑GAAAAAAATGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                        <  1:1131537/140‑1 (MQ=255)
                                ttCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTATAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                        <  2:1885133/140‑1 (MQ=255)
                                ttCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                        <  1:1577178/140‑1 (MQ=255)
                                ttCGCTCCTCATCTTACTTTTCGACAGAC‑AAAAAATAGGTGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                        <  2:963517/140‑1 (MQ=255)
                                ctCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                        <  2:2014058/139‑1 (MQ=255)
                                 tCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGc                                                                                                       >  2:1486690/1‑140 (MQ=255)
                                 tCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGc                                                                                                       >  1:461274/1‑140 (MQ=255)
                                  cGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATGCGAAT‑C‑C‑CCCTCGGGCGAGAGCCAACAAGATGAGTAGcc                                                                                                      >  2:800543/1‑139 (MQ=255)
                                     tcctcATCTTACTTTTCTACAGCC‑AAAAAAACGACTACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                                   <  2:1243143/140‑1 (MQ=255)
                                      cctcATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTc                                                                                                  <  2:1568531/140‑1 (MQ=255)
                                       ctcATCTTACTTTTCTACAGACAAAAAAAAAGGCGTCTCATCAGTCGCTTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTc                                                                                                  <  2:1024929/140‑1 (MQ=255)
                                       ctcATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCa                                                                                                 <  2:2357154/140‑1 (MQ=255)
                                         cATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATg                                                                                               >  2:95543/1‑140 (MQ=255)
                                            cTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGt                                                                                            >  2:1725362/1‑140 (MQ=255)
                                             ttACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTg                                                                                           <  2:2016988/140‑1 (MQ=255)
                                              tACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGa                                                                                          <  1:1725362/140‑1 (MQ=255)
                                                   ttCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                                   >  1:2119354/1‑126 (MQ=255)
                                                   ttCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                                   <  2:2119354/126‑1 (MQ=255)
                                                    tCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                                                                                    >  2:2456363/1‑140 (MQ=255)
                                                    tCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                                                                                    >  1:1788295/1‑140 (MQ=255)
                                                    tCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                                                                                    <  1:1486690/140‑1 (MQ=255)
                                                    tCTACAGAC‑AAAAAAAAGGCAACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                                                                                    >  2:1831341/1‑140 (MQ=255)
                                                      tACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                                     >  1:1942918/1‑137 (MQ=255)
                                                        cAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCa                                                                                                 <  2:1135043/123‑1 (MQ=255)
                                                        cAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCa                                                                                                 >  1:1135043/1‑123 (MQ=255)
                                                        cAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc                                                                                <  1:2257667/140‑1 (MQ=255)
                                                          gAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCtt                                                                              <  1:2479006/140‑1 (MQ=255)
                                                           aC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTc                                                                             >  1:1800918/1‑140 (MQ=255)
                                                           aC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTc                                                                             >  1:2131682/1‑140 (MQ=255)
                                                              aaaaaaaaGGCGACTCAACAGTGGCCTTAAATATCCGTTAGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg                                                                           <  2:945020/140‑1 (MQ=255)
                                                               aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGc                                                                          <  2:376274/140‑1 (MQ=255)
                                                                aaaaaaGGCGACTCATCTGTCGGCTTAAAAACCAGCTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                         <  2:775133/140‑1 (MQ=255)
                                                                aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCTGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                         <  2:2079579/140‑1 (MQ=255)
                                                                aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                         <  2:2288405/140‑1 (MQ=255)
                                                                aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                         <  2:461274/140‑1 (MQ=255)
                                                                   aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTc                                                                      <  1:161994/140‑1 (MQ=255)
                                                                     aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                    <  2:2226662/140‑1 (MQ=255)
                                                                     aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                    <  1:2145683/140‑1 (MQ=255)
                                                                     aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                    <  2:1557636/140‑1 (MQ=255)
                                                                      ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                                   >  2:1377209/1‑140 (MQ=255)
                                                                      ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                                   <  1:1367375/140‑1 (MQ=255)
                                                                      ggCAACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                                   <  1:1831341/140‑1 (MQ=255)
                                                                        cGACTCATCAGTCGCCTTAAAAGTCTGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                 <  1:824118/140‑1 (MQ=255)
                                                                        cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACATGATGAGTAACTCTTCAAGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                 >  2:824118/1‑140 (MQ=255)
                                                                        cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                 <  1:2318227/140‑1 (MQ=255)
                                                                                     gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGGCTTTTGCCGTCCCATGCACTTCAatgatg                                                    >  1:1220659/1‑140 (MQ=255)
                                                                                     gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                 >  1:142158/1‑127 (MQ=255)
                                                                                     gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                 <  2:142158/127‑1 (MQ=255)
                                                                                     gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                    >  1:1333794/1‑140 (MQ=255)
                                                                                     gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCCGGCCAGAGCCAACAAGATGAGTAGGTCTTCATGGGTGAGTGGCTCGTCTTGTGACGTCCCTTGCACTTCAatgatg                                                    >  1:705455/1‑140 (MQ=255)
                                                                                              aTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                           <  1:400334/140‑1 (MQ=255)
                                                                                              aTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                           <  1:95543/140‑1 (MQ=255)
                                                                                               tCAGTTTGCCAGCGCCGTCTTCGGCGTCGCTCCAAGGGACTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCtt                                          <  2:756676/140‑1 (MQ=255)
                                                                                                 aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                        <  2:538628/140‑1 (MQ=255)
                                                                                                  gTTTGCCAGCGCCGCCTTCTGCTTCGCTACATTTGCTTCT‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                       <  2:1184598/140‑1 (MQ=255)
                                                                                                   tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                      <  2:375747/140‑1 (MQ=255)
                                                                                                     tGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                    <  1:422839/140‑1 (MQ=255)
                                                                                                     tGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                    <  2:324204/140‑1 (MQ=255)
                                                                                                        cAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                 <  1:1377209/140‑1 (MQ=255)
                                                                                                              cgccTTCTGCGTCGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                           <  1:2456363/140‑1 (MQ=255)
                                                                                                                        gTCGCTACAATGGATTAT‑AT‑TCC‑CCCTCGGGGCTGAGCCAACAAGATGGGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                 <  2:1220659/140‑1 (MQ=255)
                                                                                                                          cGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct               <  2:1777303/140‑1 (MQ=255)
                                                                                                                          cGCTACAATGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct               >  1:1834633/1‑140 (MQ=255)
                                                                                                                                 aTGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc        >  2:2392793/1‑140 (MQ=255)
                                                                                                                                  tGGATTCG‑AT‑TCC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa       <  1:2392793/140‑1 (MQ=255)
                                                                                                                                    gattcg‑at‑tcC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga     <  2:1788295/140‑1 (MQ=255)
                                                                                                                                    gattcg‑at‑tcC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga     <  1:606434/140‑1 (MQ=255)
                                                                                                                                      ttcg‑at‑tcC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt   >  1:1773482/1‑140 (MQ=255)
                                                                                                                                       tcg‑at‑tcC‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGATCATCACTACGATCCTGTCGGCCTCTGCGGCAGAGTc  >  1:1051581/1‑140 (MQ=255)
                                                                                                                                               |                                                                                                                                      
TCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑AT‑T‑C‑CCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC  >  NC_000913/3815740‑3816012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A