Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F142 I0 R1
|
859 |
274.6 |
8723680 |
96.4% |
8409627 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,108,219:1 |
+A |
100% |
coding (1159/1395 nt) |
wcaM ← |
colanic acid biosynthesis protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,108,219 | 1 | . | A | 90.0%
| 647.0
/ 66.9
| 190 | coding (1159/1395 nt) | wcaM | colanic acid biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base . (11/8); new base A (77/94); total (88/102) |
| Fisher's exact test for biased strand distribution p-value = 3.37e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
Only 100 of 196 total aligned reads displayed.
TTTTCATTCACCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATA > CP009273/2108074‑2108364
|
ttcattcaCCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑aaaaaa < 2:3268732/150‑1 (MQ=255)
tcattcaCCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑aaaaaaa > 2:408543/1‑150 (MQ=255)
tcaCCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑aaaaaaaatgt > 1:3550697/1‑146 (MQ=255)
aCCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTg < 2:2106508/150‑1 (MQ=255)
aCCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTg < 2:2032300/150‑1 (MQ=255)
gCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCgg > 1:3809402/1‑150 (MQ=255)
cATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGt > 2:1329160/1‑150 (MQ=255)
aTGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGtt > 1:333929/1‑150 (MQ=255)
aTGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGtt < 1:3912195/150‑1 (MQ=255)
aTGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGtt > 1:585078/1‑150 (MQ=255)
tGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGAATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGttt < 1:1630936/150‑1 (MQ=255)
aaCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGgtgtgt > 2:282695/1‑150 (MQ=255)
aCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTttgtt < 1:1215928/150‑1 (MQ=255)
cATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTttgttg < 1:91085/150‑1 (MQ=255)
aTTTGCAAGAGACAGCAGTGTTTCTTTTTTCTCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCAAATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTtgttgt > 2:4264072/1‑150 (MQ=255)
aTTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTtgttgt > 2:4049414/1‑150 (MQ=255)
aTTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTtgtg < 2:970243/150‑1 (MQ=255)
tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTtgtg < 2:727634/150‑1 (MQ=255)
tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTtgtg < 2:4147425/150‑1 (MQ=255)
cAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAAc < 2:61967/150‑1 (MQ=255)
cAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACt < 2:2385695/150‑1 (MQ=255)
agaCAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCa < 1:156695/150‑1 (MQ=255)
gaCAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAg > 2:3380188/1‑150 (MQ=255)
agcagTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGa > 1:2081116/1‑150 (MQ=255)
gcagTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGac > 1:3119475/1‑150 (MQ=255)
agTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGacgc > 1:3658413/1‑150 (MQ=255)
agTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGacgca > 1:1902581/1‑150 (MQ=255)
gtgtTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGacgca < 2:4181483/150‑1 (MQ=255)
cTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTc > 2:3199436/1‑150 (MQ=255)
cTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTc < 2:3560592/150‑1 (MQ=255)
cTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCa > 2:2617660/1‑150 (MQ=255)
tttttCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCAt > 2:1274432/1‑150 (MQ=255)
tttttCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCAt > 1:733043/1‑150 (MQ=255)
cGCCATAAAAACACCACGAAAGTCTTTGCGCATGTCAAAGTTCATGCTCAATTCGGGTCCAACTGAGGATTCCTGAATCACATTGATATTTCGA‑‑ATAAAAAAAATGTTGCTGTTGGTTTTGTAACTCCAGCGACGCACGCTTCTTATCaa > 2:1004646/1‑150 (MQ=255)
gCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAAt < 2:3277115/150‑1 (MQ=255)
gCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAAt < 1:2940784/150‑1 (MQ=255)
aTAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgtt > 2:1290270/1‑150 (MQ=255)
tAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgtta < 2:271142/150‑1 (MQ=255)
aaaaaCACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgttag < 1:205912/150‑1 (MQ=255)
aaaaaCACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgttag > 2:1930510/1‑150 (MQ=255)
aaaaCACCACGGACCTCGTTGGGCCTTTAAAAAGTCCTTGTCAATGCGGGTTCAACTGTGGTTTCCGGGCTCACCATGATTTTTCGCAAAA‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgttag < 2:2376632/150‑1 (MQ=255)
aaaaCACCACGAACGTCTTTGCGCGTGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgttagt < 2:3758595/150‑1 (MQ=255)
aaaaCACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATgttagt > 2:4113906/1‑150 (MQ=255)
acacCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGttagttag > 1:2384341/1‑150 (MQ=255)
gAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCcaca > 1:502379/1‑150 (MQ=255)
aaCGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACaa < 1:26393/150‑1 (MQ=255)
aaCGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACaa < 1:27593/150‑1 (MQ=255)
aCGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACaaa > 1:217875/1‑150 (MQ=255)
cTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGaa < 1:2012148/150‑1 (MQ=255)
cTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGaa < 2:2271411/150‑1 (MQ=255)
cTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGaa > 1:3440839/1‑150 (MQ=255)
cATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAt < 2:2935690/150‑1 (MQ=255)
cATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAt < 2:2935073/150‑1 (MQ=255)
cATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAt > 2:2330571/1‑150 (MQ=255)
cATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAt > 2:1340533/1‑150 (MQ=255)
cATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAt > 1:4066762/1‑150 (MQ=255)
cATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAAAAGCAt > 2:2577534/1‑150 (MQ=255)
aTGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAtt > 2:742374/1‑150 (MQ=255)
aTGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCAtt > 2:742350/1‑150 (MQ=255)
tGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTc > 1:395358/1‑150 (MQ=255)
cAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCcg < 1:1813552/150‑1 (MQ=255)
aaaGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCcgg > 2:1445182/1‑150 (MQ=255)
tCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGgag < 2:518590/150‑1 (MQ=255)
aTGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAt < 2:2170525/150‑1 (MQ=255)
aTGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAt > 1:399007/1‑150 (MQ=255)
aTGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAt < 2:3484999/150‑1 (MQ=255)
aTGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAt < 2:3070085/150‑1 (MQ=255)
gCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAttt > 1:3541115/1‑150 (MQ=255)
gCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAttt < 1:2913039/150‑1 (MQ=255)
gCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGAttt < 1:1922409/150‑1 (MQ=255)
cTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTg < 2:579728/150‑1 (MQ=255)
cTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTg > 2:2854843/1‑150 (MQ=255)
tCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGa > 1:10664/1‑150 (MQ=255)
cAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGaa > 2:3251/1‑150 (MQ=255)
aaTGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAAt > 1:320508/1‑150 (MQ=255)
aaTGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAAt < 1:1290344/150‑1 (MQ=255)
cGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCcg < 1:690120/150‑1 (MQ=255)
tCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCa < 2:1062630/150‑1 (MQ=255)
ccAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAAt < 1:3685703/150‑1 (MQ=255)
cAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCCATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAAt < 1:3840007/150‑1 (MQ=255)
aCTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAAttt < 2:2372790/150‑1 (MQ=255)
aCTGAGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAAttt < 1:1338401/150‑1 (MQ=255)
gAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATaa > 2:1012916/1‑150 (MQ=255)
aGGATTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATaa < 2:3996582/150‑1 (MQ=255)
aGGATTCCTGCATCACATTGATATGTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATaa < 2:4297022/150‑1 (MQ=255)
aTTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCa < 1:4240098/150‑1 (MQ=255)
aTTCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCa > 2:1569267/1‑150 (MQ=255)
tCCTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAg < 2:3289372/150‑1 (MQ=255)
ccTGCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGa > 1:3253553/1‑150 (MQ=255)
gCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGa > 1:417098/1‑150 (MQ=255)
gCATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGa < 2:383738/150‑1 (MQ=255)
cATCACATTGATATTTCGC‑‑ATAAAAAAAATGTTGAGGTTTGTTGTGTAACTCCAGAGACTCACGCTTCATCTCAATTTTAGTTAGCTCCACAAAGGAAACAGCATTCCCTTCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAg > 1:3773811/1‑150 (MQ=255)
acaTTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGtatt < 1:1378100/150‑1 (MQ=255)
caTTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGtatta < 2:2210690/150‑1 (MQ=255)
aTTGATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCCATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGtattat < 1:1252973/150‑1 (MQ=255)
gATATTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCa < 2:911014/150‑1 (MQ=255)
gATAGTGCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCCTCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCa < 2:1237037/150‑1 (MQ=255)
tatTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGt > 1:3737927/1‑150 (MQ=255)
tatTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGt < 1:1719366/150‑1 (MQ=255)
atTTCGC‑‑ATAAAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGtt > 1:1390414/1‑150 (MQ=255)
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TTTTCATTCACCGCATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAAAACACCACGAACGTCTTTGCGCATGTCAAAGTTCATGCTCAATGCGGGTCCAACTGAGGATTCCTGCATCACATTGATATTTCGC‑‑AT‑AAAAAAATGTTGCGGTTTGTTGTGTAACTCCAGCGACGCACGCTTCATCTCAATGTTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATA > CP009273/2108074‑2108364
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
