Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F434 I0 R1 1130 215.9 7031662 97.1% 6827743 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,004,533 G→T 100% T151T (ACG→ACT)  yedL → putative acyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,004,5330GT100.0% 384.1 / ‑6.7 151T151T (ACG→ACT) yedLputative acyl transferase
Reads supporting (aligned to +/- strand):  ref base G (2/1);  major base T (71/73);  minor base A (4/0);  total (77/74)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 153 total aligned reads displayed.

GATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT  >  CP009273/2004388‑2004676
                                                                                                                                                 |                                                                                                                                                
gATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGActct                                                                                                                                                <  1:2148268/148‑1 (MQ=255)
   gCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATg                                                                                                                                             <  2:849342/148‑1 (MQ=255)
      ttCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGa                                                                                                                                          >  2:1587500/1‑148 (MQ=255)
        cATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACGGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGaaa                                                                                                                                        <  2:1235200/148‑1 (MQ=255)
         aTCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGaaaa                                                                                                                                       <  1:1713759/148‑1 (MQ=255)
         aTCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGaaaa                                                                                                                                       <  1:1713829/148‑1 (MQ=255)
            gCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAaataa                                                                                                                                    <  2:88572/148‑1 (MQ=255)
              cTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAA‑Tg                                                                                                                                 <  2:816009/148‑1 (MQ=255)
                gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAAATTAATCTATTCGAAAATAA‑Tgta                                                                                                                               >  1:48628/1‑146 (MQ=255)
                gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTAATCTATTCGAAaataaataa                                                                                                                                >  1:1724123/1‑144 (MQ=255)
                gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTATTATAATTGAATATATTCGAAAAAAA‑AGaa                                                                                                                               >  2:3178265/1‑148 (MQ=255)
                 aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAAt                                                                                                                              <  1:2224537/148‑1 (MQ=255)
                 aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAAt                                                                                                                              <  1:2224872/148‑1 (MQ=255)
                 aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAAt                                                                                                                              <  2:2370907/148‑1 (MQ=255)
                  gCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACTATATTCGAAAATAA‑TGAAtt                                                                                                                             >  1:1927585/1‑148 (MQ=255)
                    ttAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTCATTTTCTATAATGGAAAAAAA‑TGAAtttg                                                                                                                           >  1:1316784/1‑146 (MQ=255)
                    ttAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACTATATTCGGAAATaa‑ttaatttg                                                                                                                           >  1:1316923/1‑146 (MQ=255)
                     tAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCGATGCGAAAATAA‑TGAATTTcc                                                                                                                          >  1:1139670/1‑148 (MQ=255)
                        aaaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACTCTATTCGAAAATAA‑TGAATTTCCATg                                                                                                                       >  1:2303651/1‑148 (MQ=255)
                        aaaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATg                                                                                                                       <  1:742246/148‑1 (MQ=255)
                        aaaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACTCTATGCGTAAATAA‑TGAATTGGCATg                                                                                                                       >  1:851094/1‑148 (MQ=255)
                          aCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATTGGAAAAAAA‑TGTCTTGCACTGAg                                                                                                                     >  2:1892231/1‑148 (MQ=255)
                          aCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATAATTTTCTCTATGGGAAAATAA‑TTAATTTCCATGAg                                                                                                                     >  1:1357630/1‑148 (MQ=255)
                          aCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACATTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAg                                                                                                                     <  1:768857/148‑1 (MQ=255)
                           cGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGc                                                                                                                    <  2:2892115/148‑1 (MQ=255)
                           cGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGTCTCTATGAGAAAATAA‑TGAATTTCCATGAGc                                                                                                                    >  2:3186831/1‑148 (MQ=255)
                              gTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAg                                                                                                                 <  1:3224619/148‑1 (MQ=255)
                                acacAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTAATCTAATCGAAAATAA‑TTAATTGTCAGGTGCCAGaa                                                                                                               >  1:3324937/1‑147 (MQ=255)
                                 cacaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTCATTTTCTCTATGGGAAAAAAA‑TTAATTTACATGTGCCCGACg                                                                                                              >  1:2802292/1‑148 (MQ=255)
                                  acaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACgc                                                                                                             <  1:2424002/148‑1 (MQ=255)
                                  acaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACgc                                                                                                             <  1:661483/148‑1 (MQ=255)
                                     ggCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGAATCTATGCGAAAATAA‑TGAATTTCCATGAGCCAGACgcagc                                                                                                          >  2:1056140/1‑148 (MQ=255)
                                       cTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTAATATATGCGAAAATAA‑TGAATTTCCATGAGCCAGACGCAGcac                                                                                                        >  2:2228258/1‑148 (MQ=255)
                                        tGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGcaca                                                                                                       >  2:770376/1‑148 (MQ=255)
                                        tGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGTCTCTATGCGCAAATAA‑AGAATTTCCATTAGCCAGACgcagcaaa                                                                                                       >  2:2955496/1‑146 (MQ=255)
                                          gATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACTCAATTCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGcacaat                                                                                                     >  2:3475421/1‑146 (MQ=255)
                                           aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTc                                                                                                    <  1:1501570/148‑1 (MQ=255)
                                               aCGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACTCTATGCGAAAATAA‑TGAATTTGCATGAGCCAGACCGAGCACATTCtttc                                                                                                >  2:1319715/1‑146 (MQ=255)
                                                cGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTAATATATGCGAAAATAA‑TTAATTTCCAAGAGCCCGACGCAGCACAATATTgaa                                                                                               >  2:2075931/1‑146 (MQ=255)
                                                aggCCTGCCATCAACTTTATTTGAAGCATTGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACATGATCCACACAGTCGATTTTTATAAAAGACAACATGACAAAAAAA‑TTAATTTCCAATATCCAGAACCAGCACAGTCtttga                                                                                               >  2:2686893/2‑145 (MQ=255)
                                                 ggCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCAt                                                                                              <  1:57281/148‑1 (MQ=255)
                                                        cATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTCATTTAATCAATGCGAAAATAA‑TTAATTTCCAATAGCCACACGCAGCAAAATATTTCATTAGACGt                                                                                       >  2:1262684/1‑148 (MQ=255)
                                                         aTCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtg                                                                                      <  1:3353745/148‑1 (MQ=255)
                                                         aTCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtg                                                                                      <  1:3353928/148‑1 (MQ=255)
                                                          tCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTTTTATTGAATCAATTCGAAAATAATTAAATTGCCA‑GAACCACACCCCGCACAATCTTTGAATAGACGtgc                                                                                     >  1:1873839/1‑148 (MQ=255)
                                                              cTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTTATATATTGGGAAAAAA‑TTAATTTGCAATAGCCAGACGCCCCACAATATTTAATTAGACCTGCTgcg                                                                                 >  1:1292668/1‑148 (MQ=255)
                                                               tttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTgcgc                                                                                <  2:1509866/148‑1 (MQ=255)
                                                                ttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTTATAGATGCGCAAATAA‑ATAATTTACATGTGCCAGACGCACCACATAAATTCATTCGACGTGCTGGGcc                                                                               >  1:2138676/1‑148 (MQ=255)
                                                                ttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTAATCTATGCGAAAATAA‑ATAATTTGCCTGAGCCAGACCCAGCACAATCTTGGATTCGACGTGCTGCGcc                                                                               >  1:3161498/1‑148 (MQ=255)
                                                                     tGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttat                                                                          <  1:800707/148‑1 (MQ=255)
                                                                        aGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttattta                                                                       <  2:581353/148‑1 (MQ=255)
                                                                         gCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTttatttat                                                                      >  2:3224551/1‑148 (MQ=255)
                                                                         gCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTttatttat                                                                      <  1:2015582/148‑1 (MQ=255)
                                                                           aTGGTTTAGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCa                                                                    <  1:2363468/148‑1 (MQ=255)
                                                                           aTGGTTTAGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCa                                                                    <  1:2363437/148‑1 (MQ=255)
                                                                             tgTTTCTCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATAAcc                                                                  <  2:1964324/147‑1 (MQ=255)
                                                                             ggTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTGACAGTATGCGAAAATAA‑TGAAATTCCATTATCCAGTAGCACAACAAACTTTCATTAGACGAGCTGCACCGttatttataaac                                                                  >  2:3391680/1‑144 (MQ=255)
                                                                             ggTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATAATTGACTCGATGCGAAAATAA‑AGAAATGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCAcc                                                                  >  2:3388029/1‑148 (MQ=255)
                                                                              gTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTTTAATTGACTCTTTTCGAAAATAA‑TTAATTTGCATGAGCCAGACGCACCACAATCTTTGATTAGACGTGCTTGGCCTTTATTTATAACca                                                                 >  2:1506039/1‑148 (MQ=255)
                                                                               tttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACcag                                                                <  1:2784528/148‑1 (MQ=255)
                                                                               tttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTTTAATTTTATCTATTCGAAAAAAA‑ATAATTTCCAATTGCCCGACGCAGCACAAAAATTGATTAGAAGTGGGGGGCCGTTATTTATAACcag                                                                >  1:1151972/1‑148 (MQ=255)
                                                                                ttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACcagc                                                               <  1:2274283/148‑1 (MQ=255)
                                                                                ttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACcagc                                                               <  1:1555285/148‑1 (MQ=255)
                                                                                ttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTACTCAATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACAATCTTGCATTAGACGTGCTGCGCCGTTATTTATCAcacgc                                                               >  2:3420763/1‑144 (MQ=255)
                                                                                   gCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑AGAATTGCCATGAGCCAGACGCAGCACATTATTGGATTCGACGTGCTGCGCCTTTATTTATAACCAGCAgg                                                            >  2:548060/1‑148 (MQ=255)
                                                                                   gCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAATTTCTCTATGCGCAAAAAA‑TTAAATGGCCTGAGCCCGACGCACCACAATCTTTCATTCGACGTGGTGCGCCGTTATTTATAAAcagcaag                                                            >  1:1983906/1‑146 (MQ=255)
                                                                                    cTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGa                                                           <  2:1766647/148‑1 (MQ=255)
                                                                                     tGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTAATCTATGCGAAAATAA‑AGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTAGACGTGCTTCGCCTTTATTTATAAACACCAGGaa                                                          >  2:1594119/1‑148 (MQ=255)
                                                                                        ttGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATGACTCGATTCGAAAAAAA‑AGAATTTCCAAGCGCCAGACGCACCACCATATTTCAGTCGGAGTGCTGGCCCTTTTTTTATCACAACCCGGaaaag                                                       >  2:324834/1‑146 (MQ=255)
                                                                                          gCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTTGCATTAGCCACACGCCGCACAATATTGCAATCGACCTGCAGCGCCGTTTTTTATAACCCCCACGAAACGcc                                                     >  2:318060/1‑148 (MQ=255)
                                                                                            gAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCtt                                                   <  1:2756331/148‑1 (MQ=255)
                                                                                             aaCCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTg                                                  <  1:3504139/148‑1 (MQ=255)
                                                                                                cGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACTCTATGCGAAAATAA‑TTAAATTCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCGTTATTTATAACCAGCAGGAAACGCCTTGTcc                                               >  2:2261754/1‑148 (MQ=255)
                                                                                                cGTGTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTcc                                               <  2:3334628/148‑1 (MQ=255)
                                                                                                 gTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCa                                              <  1:118043/148‑1 (MQ=255)
                                                                                                  ttttCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCAt                                             <  1:251530/148‑1 (MQ=255)
                                                                                                           tATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATTA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGcccc                                    <  1:2937788/148‑1 (MQ=255)
                                                                                                            aTCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGTATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCGTTATTTATAACCAGCAGGTAAAGCCTTGTCCAAAGACGcccca                                   >  2:2529876/1‑147 (MQ=255)
                                                                                                            aTCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCt                                   <  2:2465146/148‑1 (MQ=255)
                                                                                                              cGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTc                                 <  2:456380/148‑1 (MQ=255)
                                                                                                                aCTTGATCCACACAGTCGATTTTTTTCATTGACTCTATGCGAAAATAA‑TTAATTTCCATGAGCCAGACCCAGCAAATTATTGCATTAGACGTGCTGCGCCTTTAATTATAACCAGCAGGGAAACCCTTGTACAATGACGCCCCTTCca                               >  2:971114/1‑148 (MQ=255)
                                                                                                                  ttGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCcaca                             <  2:11108/148‑1 (MQ=255)
                                                                                                                  ttGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCcaca                             <  2:8130/148‑1 (MQ=255)
                                                                                                                  ttGATCCACACAGTCGATTTTTATCATTGAATCTATTCGAAAATAA‑AGAATTGCCATGAGCCAGAAGCAGCACAATCTTGCATTAGACGTGCTGCGCCTTTATTTATAACCAGCAGGAAACGCCTTGTACAAATAAGCCCCAACcaca                             >  2:2777332/1‑148 (MQ=255)
                                                                                                                       ccccaccGTCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCAGTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATgcgc                        <  2:1849650/145‑1 (MQ=255)
                                                                                                                        cacacaGTCGATTTTTATCAATTAAACAAAGCGCAAATAA‑TGAATTTCCAAGATCCAGACCCACCACAATATTGCAATCGACGTGCTGCGCCTTTATTTATAAACAGCCGGAAACGCCATGTCCAAAGACGCCCCGTCCACAAGCGcc                       >  2:2081192/1‑148 (MQ=255)
                                                                                                                               tCGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAAAGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGaa                >  1:2782159/1‑148 (MQ=255)
                                                                                                                                cGATTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGaaa               >  2:392164/1‑148 (MQ=255)
                                                                                                                                  aTTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAAcc             >  2:146387/1‑148 (MQ=255)
                                                                                                                                  aTTTTTATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAAcc             >  2:146383/1‑148 (MQ=255)
                                                                                                                                   tttttATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACct            <  2:1266453/148‑1 (MQ=255)
                                                                                                                                   tttttATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACct            <  2:2235515/148‑1 (MQ=255)
                                                                                                                                   tttttATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACct            <  2:1265754/148‑1 (MQ=255)
                                                                                                                                    ttttATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAACCGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACctc           <  1:332084/148‑1 (MQ=255)
                                                                                                                                     tttATCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACctct          >  1:1330325/1‑148 (MQ=255)
                                                                                                                                        aTCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTAtt       >  2:2376323/1‑148 (MQ=255)
                                                                                                                                         tCATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTc      >  2:2723279/1‑148 (MQ=255)
                                                                                                                                          cATTGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTcc     >  1:1880213/1‑148 (MQ=255)
                                                                                                                                            ttGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAg   >  2:609869/1‑148 (MQ=255)
                                                                                                                                             tGACTCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGt  >  1:183439/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                
GATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT  >  CP009273/2004388‑2004676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGAC  >  CP009273/2004388‑2004679
                                                                                                                                                 |                                                                                                                                                  
GATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTAT                                                                                                                                                <  SRR19973065.2162082/150‑1 (MQ=60)
GATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTAT                                                                                                                                                <  SRR19973065.2162087/150‑1 (MQ=60)
         ATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATA                                                                                                                                       <  SRR19973065.1725312/150‑1 (MQ=60)
         ATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATA                                                                                                                                       <  SRR19973065.1725223/150‑1 (MQ=60)
         ATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATA                                                                                                                                       <  SRR19973065.1725153/150‑1 (MQ=60)
           CGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAAT                                                                                                                                     <  SRR19973065.1460336/150‑1 (MQ=60)
                GAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACTATATTCGAAAATAATGAATT                                                                                                                                >  SRR19973065.1940213/1‑150 (MQ=60)
                GAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATT                                                                                                                                <  SRR19973065.3404368/150‑1 (MQ=60)
                 AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTG                                                                                                                               <  SRR19973065.1944312/150‑1 (MQ=60)
                 AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTG                                                                                                                               <  SRR19973065.793616/150‑1 (MQ=60)
                 AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTG                                                                                                                               <  SRR19973065.326680/150‑1 (MQ=60)
                 AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTG                                                                                                                               <  SRR19973065.2239053/150‑1 (MQ=60)
                 AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTG                                                                                                                               <  SRR19973065.2238718/150‑1 (MQ=60)
                   CTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCGATGCGAAAATAATGAATTTCC                                                                                                                             >  SRR19973065.1147044/1‑150 (MQ=60)
                      AGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACTCTATTCGAAAATAATGAATTTCCATG                                                                                                                          >  SRR19973065.2318138/1‑150 (MQ=60)
                      AGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACTCTATGCGTAAATAATGAATTGGCATG                                                                                                                          >  SRR19973065.856603/1‑150 (MQ=60)
                        AAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAG                                                                                                                        <  SRR19973065.747216/150‑1 (MQ=60)
                        AAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATAATTTTCTCTATGGGAAAATAATTAATTTCCATGAG                                                                                                                        >  SRR19973065.1366625/1‑150 (MQ=60)
                          ACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACATTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCC                                                                                                                      <  SRR19973065.773966/150‑1 (MQ=60)
                              GTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGAC                                                                                                                  <  SRR19973065.3243982/150‑1 (MQ=60)
                                  ACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAG                                                                                                              <  SRR19973065.665860/150‑1 (MQ=60)
                                  ACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAG                                                                                                              <  SRR19973065.2439289/150‑1 (MQ=60)
                                           ATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCCTTTTCGCTTTGCGAAAATAATGTATTGCCATGTGGCAGACGCACCACAATCTT                                                                                                     >  SRR19973065.2843778/1‑150 (MQ=60)
                                           ATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTT                                                                                                     <  SRR19973065.1511272/150‑1 (MQ=60)
                                                 GGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTC                                                                                               <  SRR19973065.57894/150‑1 (MQ=60)
                                                      GCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGT                                                                                          <  SRR19973065.533510/150‑1 (MQ=60)
                                                         ATCAACTTTATTTTAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAGTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCT                                                                                       <  SRR19973065.3374232/150‑1 (MQ=60)
                                                         ATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCT                                                                                       <  SRR19973065.3374426/150‑1 (MQ=60)
                                                         ATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCT                                                                                       <  SRR19973065.3374239/150‑1 (MQ=60)
                                                           CAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGC                                                                                     <  SRR19973065.228641/150‑1 (MQ=60)
                                                              CTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTAATCTATGCGAAAATAAATAATTTGCCTGAGCCAGACCCAGCACAATCTTGGATTCGACGTGCTGCGCC                                                                                  >  SRR19973065.3180650/1‑150 (MQ=60)
                                                                     TGAATAATGGTTTCGGTGATTTCGAACCTTTTGATGATTATCGAATTGATCGACACAGTATATTTTTATCATTTACTCTATGCGAAAATTATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCTTTCGACGTGCTGCGCCTTTATTT                                                                           <  SRR19973065.1323849/150‑1 (MQ=60)
                                                                     TGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTT                                                                           <  SRR19973065.806001/150‑1 (MQ=60)
                                                                      GAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTA                                                                          <  SRR19973065.1337381/150‑1 (MQ=60)
                                                                         GCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCA                                                                       <  SRR19973065.2028571/150‑1 (MQ=60)
                                                                           ATGGTTTAGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACC                                                                     <  SRR19973065.2378185/150‑1 (MQ=60)
                                                                           ATGGTTTAGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACC                                                                     <  SRR19973065.2378149/150‑1 (MQ=60)
                                                                           ATGGTTTAGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACC                                                                     <  SRR19973065.2378180/150‑1 (MQ=60)
                                                                             GGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACTCTATTCGAAAATAATTAATTTCCATGTGCCAGAAGCAGCACAATCTTGCATTAGACGTTCTGCGCCTTTATTTATCAacac                                                                   >  SRR19973065.1159412/1‑146 (MQ=60)
                                                                               TTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCA                                                                 <  SRR19973065.2801802/150‑1 (MQ=60)
                                                                                TTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAG                                                                <  SRR19973065.2288636/150‑1 (MQ=60)
                                                                                TTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAG                                                                <  SRR19973065.1565595/150‑1 (MQ=60)
                                                                                TTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAG                                                                <  SRR19973065.1565605/150‑1 (MQ=60)
                                                                                 TCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAATTTCTCTATGCGCAAAAAATTAAATGGCCTGAGCCCGACGCACCACAATCTTTCATTCGACGTGGTGCGCCGTTATTTATaaacagcaag                                                               >  SRR19973065.1996789/1‑140 (MQ=56)
                                                                                         TGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCT                                                       <  SRR19973065.2333290/150‑1 (MQ=60)
                                                                                            GAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGT                                                    <  SRR19973065.2773474/150‑1 (MQ=60)
                                                                                             AACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTC                                                   <  SRR19973065.3525415/150‑1 (MQ=60)
                                                                                                 GTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATA                                               <  SRR19973065.119079/150‑1 (MQ=60)
                                                                                                 GTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATA                                               <  SRR19973065.1904671/150‑1 (MQ=60)
                                                                                                 GTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACTCTATTCGAAAATAATTAATTGGCAAGAGCCAGACGCAGCACAATCTTGCATTCGACGTGCTGCGCCTTTATTTTTAACCACCAGGAAACGCCGTGTCCATA                                               >  SRR19973065.2919938/1‑150 (MQ=60)
                                                                                                  TTTTCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAG                                              <  SRR19973065.253288/150‑1 (MQ=60)
                                                                                                    TGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTTCTCAATGAGAAAAAAATTAATTGCCCTGAGCCAGACGCAGCCCAATATTTGCTTCGACGTGCGGCGCCTTTATTTATAACCACCAGGAAACGCCgtttccatacaa                                            >  SRR19973065.2198192/1‑138 (MQ=37)
                                                                                                        GATTATCGACTTGATCCACACAGTCGAGTTTTATAAATTAATCGATTCGAAAATAATGAATTTGCCGGAGCCACACGCAGCACAATCGTGCATTCGACGTGCTGCGCCGTTTTTTATAACCAGCAGGAAACCCCGTGTACAAAGACGCCC                                        >  SRR19973065.171260/1‑150 (MQ=25)
                                                                                                           TATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATTATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTT                                     <  SRR19973065.2955606/150‑1 (MQ=60)
                                                                                                               GACTTGATCCACACAGTCGAGTTTTATCATTGACTCTATGCGAAAATAATGAATTGGCATGGGCCAGACGCAGCACCATATTGGATTCGACGTGCTGCGCCTTTATTTATCACCAGCCGGAAACCCCGTGGCCATAGACGCCCCATCCAC                                 >  SRR19973065.2954610/1‑150 (MQ=60)
                                                                                                                             AGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAA                   >  SRR19973065.2799448/1‑150 (MQ=60)
                                                                                                                             AGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAAAGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAA                   >  SRR19973065.2799419/1‑150 (MQ=60)
                                                                                                                                   TTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCT             >  SRR19973065.1339125/1‑150 (MQ=60)
                                                                                                                                    TTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAACCGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTA            <  SRR19973065.334408/150‑1 (MQ=60)
                                                                                                                                    TTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTA            >  SRR19973065.2148391/1‑150 (MQ=60)
                                                                                                                                        ATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCC        >  SRR19973065.1892588/1‑150 (MQ=60)
                                                                                                                                          CATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAG      >  SRR19973065.2983645/1‑150 (MQ=60)
                                                                                                                                           ATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT     >  SRR19973065.185391/1‑150 (MQ=60)
                                                                                                                                           ATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT     >  SRR19973065.184888/1‑150 (MQ=60)
                                                                                                                                              GACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACACGAACCCTCTATTCCAGTGAC  >  SRR19973065.1271573/1‑150 (MQ=60)
                                                                                                                                              GACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGAC  >  SRR19973065.1354789/1‑150 (MQ=60)
                                                                                                                                              GACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGAC  >  SRR19973065.1272390/1‑150 (MQ=60)
                                                                                                                                              GACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGAC  >  SRR19973065.1272368/1‑150 (MQ=60)
                                                                                                                                                 |                                                                                                                                                  
GATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGAC  >  CP009273/2004388‑2004679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑