Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F361 I0 R1
|
1353 |
250.7 |
8230166 |
96.0% |
7900959 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,004,533 |
G→T |
100% |
T151T (ACG→ACT) |
yedL → |
putative acyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,004,533 | 0 | G | T | 97.4%
| 519.4
/ 4.1
| 199 | T151T (ACG→ACT) | yedL | putative acyl transferase |
| Reads supporting (aligned to +/- strand): ref base G (3/4); new base T (76/109); total (86/113) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 201 total aligned reads displayed.
AGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGA > CP009273/2004387‑2004678
|
aGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGActct < 1:2612425/149‑1 (MQ=255)
gATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTa < 2:2686761/149‑1 (MQ=255)
aTGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTAt < 2:660116/149‑1 (MQ=255)
aTGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTAt < 1:2746735/149‑1 (MQ=255)
cTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCGATGCGa > 2:3909876/1‑149 (MQ=255)
cATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTAATCTATGCGaaaa > 2:1154816/1‑149 (MQ=255)
cGCCTGAGCTTAGAAACGGGTACAAAGGCTGGTTTTACGGCCTGCCATCAACTTTATTTTAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCTATTTTTATCATTGACTCTATGCGAAaat‑aa < 1:995707/149‑1 (MQ=255)
cTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATTAGAAaat‑aa‑tta > 2:3007496/1‑147 (MQ=255)
tGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑aa < 2:677041/149‑1 (MQ=255)
gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCCACTTTATTTGAAGCCTGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAt < 2:414921/149‑1 (MQ=255)
gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAt < 1:3643914/149‑1 (MQ=255)
aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAtt < 2:2698601/149‑1 (MQ=255)
aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAtt < 1:3976397/149‑1 (MQ=255)
aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAtt < 2:633337/149‑1 (MQ=255)
aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAtt < 2:633400/149‑1 (MQ=255)
cTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGc < 2:2442443/149‑1 (MQ=255)
cTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGc > 2:1102827/1‑149 (MQ=255)
tAGAAACGGGTACACAGGCTGGATTTACGCCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTAGCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCa < 1:4024484/149‑1 (MQ=255)
aGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAATTACTCTATGCGAAAAT‑AA‑TG‑AATTGCCAt > 2:1725121/1‑149 (MQ=255)
aaaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGa < 1:1419098/149‑1 (MQ=255)
aaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAATGACTCTATGCGAAAAT‑AA‑TG‑AATTGACATGAg > 2:1129462/1‑149 (MQ=255)
aCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGTCTCTATGCGAAAAA‑AA‑TT‑AATTTCCCTTAGc > 2:715635/1‑149 (MQ=255)
gggTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCa > 2:335067/1‑149 (MQ=255)
tACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGAc < 1:12534/149‑1 (MQ=255)
tACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGAc < 2:4063367/149‑1 (MQ=255)
acacAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATCATTGACTCTATGCGAAAAT‑AA‑AG‑AATTTCCAAGAGCCAGACg > 2:4005160/1‑149 (MQ=255)
acaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACTCTATGCGCAAAT‑AA‑TG‑AATTGGCATGGTCCAGCCgca > 1:2231444/1‑149 (MQ=255)
acaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACgca < 2:3487204/149‑1 (MQ=255)
acaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACACTATTCGAAAAT‑AA‑TG‑AATTGCCCTGAGCCAGCCgca > 1:160029/1‑149 (MQ=255)
caGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATCATTTACTCTATTCGAAAAT‑AATTT‑AATTG‑CATGAGCCAGACgcag > 1:540031/1‑149 (MQ=255)
ggCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACgccgca > 2:2151606/1‑149 (MQ=255)
ggCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCAATTCGAAAAT‑AA‑TG‑AATTTCCATGTGCCAGACgcagca > 2:47718/1‑149 (MQ=255)
gCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTAATCTATTAGAAAAA‑AA‑AG‑AAATTACATGAGCCACACccaccaa > 1:2641557/1‑148 (MQ=255)
cTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGcaca < 2:2306895/149‑1 (MQ=255)
cTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGcaca < 2:1110668/149‑1 (MQ=255)
aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCt < 2:2002457/149‑1 (MQ=255)
aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTTTGATTTTCTGGATTCGTAAAT‑AA‑TG‑AATTTGCATGAGCCAGACGCCGCACAATCt > 1:65904/1‑149 (MQ=255)
aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTTTAATTTTCTCTATTCGAAAAT‑AA‑AG‑AAATTACAAGAGCCACACGCAGCACAATCt > 1:3465631/1‑149 (MQ=255)
tttACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTTATTTAATATATTCGAAAAA‑AA‑AT‑AATTTTCATGAGGCCCACGcaccaccataat > 1:13082/1‑143 (MQ=255)
tttACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCtt < 1:3294383/149‑1 (MQ=255)
aCGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCa < 2:488793/149‑1 (MQ=255)
cGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCAt < 2:109247/149‑1 (MQ=255)
ccTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCg < 2:1515264/149‑1 (MQ=255)
cttccATCAACTTGATCTGAAGCAAGGTTTCGCTTTTTGCGAACCGTTTGCTGATTATCGACGTGATCCACACAGTCGATTTTTATCATTGACTCTAGGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGa < 2:3549635/146‑1 (MQ=255)
cTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGa < 2:3550345/149‑1 (MQ=255)
ccATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGt < 2:831533/149‑1 (MQ=255)
cATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACGCTATGCGAAAATAAA‑TA‑AATTG‑CATGAGCCACACCCAGCCCATTAGTGGATTGGAAGtg > 1:2262322/1‑149 (MQ=255)
aaCTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgctgc < 1:773464/149‑1 (MQ=255)
tttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTTCTCTATTCGAAAAT‑AA‑TG‑AATTTGCATGTGCCACACGCAGCCCATTCTTGGATTCGTCGTGCTGGGcc > 2:2768370/1‑149 (MQ=255)
tttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AAATGGCATGAGCCAGACGCAGCACATTCTTTCATTCGACGTGCTGCGcc > 2:3093545/1‑149 (MQ=255)
ttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCt < 1:1154816/149‑1 (MQ=255)
ttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCt < 1:2358954/149‑1 (MQ=255)
aaGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttattta < 1:1566862/149‑1 (MQ=255)
aGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATTCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTttatttat > 2:246973/1‑149 (MQ=255)
aGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTttatttat < 1:3749727/149‑1 (MQ=255)
gCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATc < 1:906695/149‑1 (MQ=255)
aTGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTTATTTTATCTTTGCGAAAAA‑AA‑AT‑AATTTCCATGAGCCCAAACCACCACCATATTTGATTAGACGTGGTGCGGCGTTTTTTATAAc > 1:2460943/1‑149 (MQ=255)
ggTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACca < 2:1451258/149‑1 (MQ=255)
gTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGAATCTATGCGAAAAT‑AA‑TG‑AATTTTCATGAGCCAGACGCAGCACAATCTTGCATTCGACGTGCTGCGCCTTTATTTATAACcag > 2:1369703/1‑149 (MQ=255)
tttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACACTATTCGAAAAA‑AA‑TG‑AATTTCCATGAGCCAGACGCAGCAAAATCATGCATTCGACGTGCTGCGCCGTTATTTATCaaccac > 2:801688/1‑144 (MQ=255)
tCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACcagcag < 2:2606282/149‑1 (MQ=255)
tCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACTATTTGGGAAAAT‑AA‑TGAAATTGCC‑TGTGCCAGACGCAGCACAAATTTGCCTTAGACCTGGTGGGGCGTGATTTTTCACccgcag > 2:3443104/1‑149 (MQ=255)
cGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTTGAAGATTCGAAAAA‑AA‑TT‑TATTGGCATGAGCCACACGCAGCACCATATTGGCATCTACGTGGTGCGCCGTTTTTTTTAACCAGCAgg > 1:1818898/1‑149 (MQ=255)
cGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACTCTATTCGAAAAT‑AA‑TT‑AATTTCCATGAGCCAGACGCAGCACATTATTTCATTCGACGTGCATCGCCGTTATTTATAACcagcacg > 2:3222677/1‑147 (MQ=255)
gCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGa < 2:199528/149‑1 (MQ=255)
gCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAATGACTCTATGCGAAAAT‑AA‑AG‑AATTGCCATGAGCCAGACGCACCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGa > 2:3925923/1‑149 (MQ=255)
gCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTAATATATTCGAAAAA‑AA‑TG‑AAATTCCAAGAGACACACGCACCCAAATATTTGATTAGACGTGCAGCGCCTTTATTTATAACCAGCAGGa > 1:2952108/1‑149 (MQ=255)
gATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGTCTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTAGTGCATTCGACGTGCTGCGCCGTTATTTATAACAAGCAGGAAAc > 2:2504304/1‑149 (MQ=255)
gCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCt < 2:1905902/149‑1 (MQ=255)
gAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTg < 2:128795/149‑1 (MQ=255)
gAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCCTGAGCCACACGCAGCACAATCTTGCATTAGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTg > 2:2599902/1‑149 (MQ=255)
aaCCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACTCTATTCGAAAAT‑AA‑AT‑AATTTCCATTAGCCAGACGCAGCACAATCTTGGATTCGACGTGCTGCGCCTTTATTTATCAACACCAGGAAAACCCTTGt > 2:2172233/1‑149 (MQ=255)
tttGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑AT‑AATTTCCATGAGCCAGACGCAGCACATTATTGCATTCGACGTGCTGCGCCGTTATTTTTAACCACCAGGAAACCCCTTGTCCATa > 2:457936/1‑149 (MQ=255)
tGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGa < 1:3438483/149‑1 (MQ=255)
gCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGAc < 2:13082/149‑1 (MQ=255)
gATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGcc < 2:2923810/149‑1 (MQ=255)
tATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCt < 2:222558/149‑1 (MQ=255)
aTCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCtt < 1:3583195/149‑1 (MQ=255)
tCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTc < 1:2913805/149‑1 (MQ=255)
ttGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACAt < 2:2359396/149‑1 (MQ=255)
gATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATgc < 1:823046/149‑1 (MQ=255)
aTCCACACAGTCGATTTTTATAATTTACTCTATGCGAAAAT‑AA‑TG‑AATTGGCATGAGCCAGAAGCCGCACAAACTTTCATTCGACCTGCTGCGCCCTTATTTATCACCAGCAGGAAACGCCTTGTCCAAAGACGCCCCGTCCACCTgcg > 2:1230216/1‑149 (MQ=255)
tCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATgcgc < 1:3122339/149‑1 (MQ=255)
ccACCCAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGcc < 2:602105/149‑1 (MQ=255)
acacaGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCcac < 1:1842668/149‑1 (MQ=255)
acacaGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCcac < 1:1844298/149‑1 (MQ=255)
cacaGTCGATTTTTATCAATTAAACTATGCGAAAAA‑AA‑AG‑AAATTCCAAGAGCCACACGCAGCACAATATTTCAATAGACGTGCTGCGCCTTTATTTATAACCACCAGGAAACACCCTTTCCAAAGAAGCCCCATACACAAACGCcaca > 2:580736/1‑149 (MQ=255)
acaGTCGATTTTTATCATTTACTCAATTCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGAAGCCGCACAATCTTGCATTCGACCTGCTGCGCCTTTATTTATCACCAGCACGAAAAGCCATGTCCATAAAAGCCCCATCCACATTCGCCCCaa > 2:3431052/1‑149 (MQ=255)
aGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGa < 2:2641557/149‑1 (MQ=255)
gTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCCCAAGaa > 2:2175685/1‑149 (MQ=255)
gATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAAcc < 1:1542270/149‑1 (MQ=255)
tttttATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACctc > 2:2023793/1‑149 (MQ=255)
tttttATCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACctc > 1:3800474/1‑149 (MQ=255)
tttttATCATTGACTCTAGGAGAAAAT‑AA‑TG‑AATTGCCATGAGACAGTCGAAGCACATTCTTGAATTAGAGGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTACACATGCGCCACAAGAAACctc < 2:2977581/149‑1 (MQ=255)
aTCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTc > 1:935990/1‑149 (MQ=255)
tCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTcc > 2:2262559/1‑149 (MQ=255)
tCATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTcc < 1:2982293/149‑1 (MQ=255)
cATTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCa < 1:1592131/149‑1 (MQ=255)
aTTGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAg < 1:1352565/149‑1 (MQ=255)
ttGACTCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGt > 2:2058198/1‑149 (MQ=255)
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AGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TG‑AATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGA > CP009273/2004387‑2004678
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACAC > CP009273/2004387‑2004681
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AGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTA < SRR19973068.2628890/150‑1 (MQ=60)
ATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATG < SRR19973068.2763632/150‑1 (MQ=60)
TTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGTTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAA < SRR19973068.1178180/150‑1 (MQ=60)
CGCCTGAGCTTAGAAACGGGTACAAAGGCTGGTTTTACGGCCTGCCATCAACTTTATTTTAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCTATTTTTATCATTGACTCTATGCGAAAAT‑AA‑T < SRR19973068.1002236/150‑1 (MQ=60)
GAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATT < SRR19973068.3665987/150‑1 (MQ=60)
AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTG < SRR19973068.4000447/150‑1 (MQ=60)
AGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTG < SRR19973068.4002808/150‑1 (MQ=60)
GCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGC < SRR19973068.804423/150‑1 (MQ=60)
GCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTTCTCTATGCGAAAAT‑AAagaaattg > SRR19973068.3292673/1‑142 (MQ=60)
TAGAAACGGGTACACAGGCTGGATTTACGCCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTAGCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCAT < SRR19973068.4048765/150‑1 (MQ=60)
AAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAG < SRR19973068.1428312/150‑1 (MQ=60)
TACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACG < SRR19973068.3498025/150‑1 (MQ=60)
TACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACG < SRR19973068.12728/150‑1 (MQ=60)
TACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACG < SRR19973068.1300083/150‑1 (MQ=60)
CACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACTCTATGCGCAAAT‑AA‑TGAATTGGCATGGTCCAGCCGCA > SRR19973068.2246012/1‑150 (MQ=60)
CACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCA < SRR19973068.1843777/150‑1 (MQ=60)
CACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCA < SRR19973068.41298/150‑1 (MQ=60)
CACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACACTATTCGAAAAT‑AA‑TGAATTGCCCTGAGCCAGCCGCA > SRR19973068.161366/1‑150 (MQ=60)
ACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATCATTTACTCTATTCGAAAAT‑AATTTAATTG‑CATGAGCCAGACGCAG > SRR19973068.543763/1‑150 (MQ=60)
GGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTACTCTATGCGAAAAT‑AA‑AGTATTTGCAGGAGCCAGACCCAGCAC > SRR19973068.160232/1‑150 (MQ=60)
GCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACA < SRR19973068.2902020/150‑1 (MQ=60)
GGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTC < SRR19973068.3804644/150‑1 (MQ=60)
GGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTC < SRR19973068.1750872/150‑1 (MQ=60)
GATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTTTAATTTACGGTATTCGAAAATAAA‑TAAATTG‑CATGAGCCAGACGCAGCCCAATCT > SRR19973068.67216/1‑150 (MQ=60)
TTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTG < SRR19973068.3314567/150‑1 (MQ=60)
TACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCA < SRR19973068.2268029/150‑1 (MQ=60)
TGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACTCTATTCGAAAAT‑AA‑TGAATTTACATGAGCCAGACGCAGCACATTATTTCATTAGACG > SRR19973068.3106227/1‑150 (MQ=60)
CCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTAATTTACGCTATGCGAAAAT‑AAataaattgcatgagccacacccagcccattagtggattggaagtg > SRR19973068.2277014/1‑105 (MQ=60)
CATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATCATTTACTATATTCGCAAAT‑AA‑TTTATTGCCATGAGCCAGACGCAGCACAATCTTGGATTAGACGTGG > SRR19973068.2341432/1‑150 (MQ=60)
CAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATGACTCAATTCGAAAAT‑AA‑ATAATTTCCAAGAGCCAGACGCACCACCATATTTCATTCGAAGTGCTGC > SRR19973068.256762/1‑150 (MQ=60)
AACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCG < SRR19973068.778715/150‑1 (MQ=60)
TTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTT < SRR19973068.2374059/150‑1 (MQ=60)
TTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTT < SRR19973068.1162543/150‑1 (MQ=60)
ATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTA < SRR19973068.2682671/150‑1 (MQ=60)
AAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTAT < SRR19973068.1577177/150‑1 (MQ=60)
AAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTAT < SRR19973068.374028/150‑1 (MQ=60)
AGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATC < SRR19973068.3772168/150‑1 (MQ=60)
GCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCA < SRR19973068.912812/150‑1 (MQ=60)
TCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGG < SRR19973068.2392481/150‑1 (MQ=60)
GATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTTCTCTATTCGAAAAA‑AA‑ATAAATTCCAAGATCCAAACGCACCACAATATTGGATTAGACGTGCTGCGCCTTTATTTATAACCAGCACGAAACG > SRR19973068.3026082/1‑150 (MQ=41)
ATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTAATCTATGCGAAAAA‑AA‑ATAAATTCCAAGAGCCAGACGCAGCACAATATTTCATTCGACGTGCTTCGCCTTTATTTATAAACAACAGGAAACCC > SRR19973068.3378248/1‑150 (MQ=60)
CGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCAT < SRR19973068.1610025/150‑1 (MQ=60)
TGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGAC < SRR19973068.3459174/150‑1 (MQ=60)
GCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTTCACTATTCGAAAAA‑AA‑ATAATTGCCCAGAGCCAGACGCAGCACAATATTGAATTAGACGTGCAGCGCCTTTATTTATAACCAGCAGGAAACCCCATGTCCAAATACG > SRR19973068.1387624/1‑150 (MQ=44)
ATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTC < SRR19973068.3604964/150‑1 (MQ=60)
TCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCC < SRR19973068.2931972/150‑1 (MQ=60)
TCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCC < SRR19973068.2931935/150‑1 (MQ=60)
ACTTGATCCACACAGTCGAGTTTTATCATTGACTCGATGCGAAAAA‑AA‑TTAATTTCCCGGTGCCCCACCCCGCACAATGTTGGATTCGACGTGCTGCGCCTTTATTTATAACCAGCACGAAAACCCATGTCCATATAAGCCCCGTCCACA > SRR19973068.2031903/1‑150 (MQ=14)
GATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCG < SRR19973068.833208/150‑1 (MQ=60)
GATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCG < SRR19973068.828638/150‑1 (MQ=60)
TCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCC < SRR19973068.3141457/150‑1 (MQ=60)
ACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACA < SRR19973068.1854804/150‑1 (MQ=60)
ACACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACA < SRR19973068.1856455/150‑1 (MQ=60)
ACACAGTCGATTTTTATCATTGACTCGATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCAGTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACA < SRR19973068.1854841/150‑1 (MQ=60)
CACAGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAA < SRR19973068.982941/150‑1 (MQ=60)
AGTCGATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAA < SRR19973068.2138842/150‑1 (MQ=60)
CGATTTTTATCATGGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACC < SRR19973068.2646671/150‑1 (MQ=60)
GATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCT < SRR19973068.1552444/150‑1 (MQ=60)
GATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCT < SRR19973068.1552428/150‑1 (MQ=60)
ATTTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTC > SRR19973068.3823267/1‑150 (MQ=60)
TTTTATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTA < SRR19973068.1479376/150‑1 (MQ=60)
TATCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTC > SRR19973068.942278/1‑150 (MQ=60)
TCATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCA < SRR19973068.3000741/150‑1 (MQ=60)
CATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAG < SRR19973068.1602576/150‑1 (MQ=60)
ATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT < SRR19973068.1361251/150‑1 (MQ=60)
ATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT < SRR19973068.1361263/150‑1 (MQ=60)
ATTGACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGT < SRR19973068.1361273/150‑1 (MQ=60)
GACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGAC < SRR19973068.3967421/150‑1 (MQ=60)
ACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACA < SRR19973068.1233090/150‑1 (MQ=60)
ACTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACA < SRR19973068.399738/150‑1 (MQ=60)
CTCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACAC > SRR19973068.701476/1‑150 (MQ=60)
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AGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAAT‑AA‑TGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACAC > CP009273/2004387‑2004681
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
