Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,004,533 G→T 5.8% T151T (ACG→ACT)  yedL → putative acyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,004,5330GT 5.8% 947.5 / 21.1 269T151T (ACG→ACT) yedLputative acyl transferase
Reads supporting (aligned to +/- strand):  ref base G (127/122);  new base T (11/6);  total (141/128)
Fisher's exact test for biased strand distribution p-value = 3.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 272 total aligned reads displayed.

GACAGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACACA  >  CP009273/2004384‑2004682
                                                                                                                                                     |                                                                                                                                                     
gACAGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGACCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACg                                                                                                                                                       >  2:823048/1‑150 (MQ=255)
     aTGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATg                                                                                                                                                  <  1:3196720/150‑1 (MQ=255)
     aTGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATg                                                                                                                                                  <  1:2436913/150‑1 (MQ=255)
     aTGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCAATGACGCAATg                                                                                                                                                  >  1:3503796/1‑150 (MQ=255)
         cTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGaa                                                                                                                                              >  2:3372131/1‑150 (MQ=255)
             aTCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAaata                                                                                                                                          >  2:3577942/1‑150 (MQ=255)
              tCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAaataa                                                                                                                                         <  2:1777539/150‑1 (MQ=255)
              tCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAaataa                                                                                                                                         <  1:1842097/150‑1 (MQ=255)
                gCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATg                                                                                                                                       <  1:3953029/150‑1 (MQ=255)
                 ccTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTAGTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAAATTAAGATAAGCGAAAATAAAGa                                                                                                                                      >  1:1986686/1‑150 (MQ=255)
                  cTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGaa                                                                                                                                     >  2:482475/1‑150 (MQ=255)
                  cTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGaa                                                                                                                                     >  2:4510251/1‑150 (MQ=255)
                  cTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGaa                                                                                                                                     <  2:3681860/150‑1 (MQ=255)
                   tGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATATTTATCATTGACGCTATGCGAAAATAATGAAt                                                                                                                                    >  1:3467812/1‑150 (MQ=255)
                    gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAAtt                                                                                                                                   <  1:150072/150‑1 (MQ=255)
                    gAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACGCTATGCGAAAATAATGAAtt                                                                                                                                   >  2:2374033/1‑150 (MQ=255)
                     aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTg                                                                                                                                  <  1:1709949/150‑1 (MQ=255)
                     aGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTg                                                                                                                                  <  1:847251/150‑1 (MQ=255)
                       cTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGcc                                                                                                                                >  2:419732/1‑150 (MQ=255)
                         tAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTTTCAATGAAGCTATGCGAAAATAATGAAATTCCAt                                                                                                                              >  1:172461/1‑150 (MQ=255)
                          aGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATg                                                                                                                             <  1:2216024/150‑1 (MQ=255)
                          aGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATg                                                                                                                             <  1:2742354/150‑1 (MQ=255)
                           gAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGa                                                                                                                            >  2:1178651/1‑150 (MQ=255)
                           gAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGa                                                                                                                            <  2:337341/150‑1 (MQ=255)
                            aaaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAg                                                                                                                           <  2:4241244/150‑1 (MQ=255)
                             aaCGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGc                                                                                                                          >  2:2630636/1‑150 (MQ=255)
                               cGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCa                                                                                                                        <  2:4346589/150‑1 (MQ=255)
                                    acacAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACgc                                                                                                                   >  1:1480596/1‑150 (MQ=255)
                                    acacAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGAAGCTATTCGAAAATAATGAATTGACATGAGCCAGACgc                                                                                                                   >  1:3692612/1‑150 (MQ=255)
                                    acacAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACgc                                                                                                                   >  1:3692721/1‑150 (MQ=255)
                                      acaGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACgcag                                                                                                                 <  2:178030/150‑1 (MQ=255)
                                        aGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACgcagca                                                                                                               <  2:2832691/150‑1 (MQ=255)
                                        aGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCGATGCGAAAATAATGAATTGCCATGAGCCAGACgcagca                                                                                                               >  1:696392/1‑150 (MQ=255)
                                          gCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGcaca                                                                                                             >  2:932334/1‑150 (MQ=255)
                                            tGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGAGTTTTATAATTTACGCTATGCGAAAATAATGTATTGCCATGAGACAGACGCAGCACAtt                                                                                                           >  1:3590991/1‑150 (MQ=255)
                                               aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCtt                                                                                                        <  1:3816457/150‑1 (MQ=255)
                                               aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCtt                                                                                                        <  1:1059228/150‑1 (MQ=255)
                                               aTTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAAATGCCATGAGCCAGACGCAGCACATTCtt                                                                                                        >  2:2103156/1‑150 (MQ=255)
                                                   aCGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCAt                                                                                                    <  1:2181391/150‑1 (MQ=255)
                                                    cggccggcCATCCACTGTATATGAAGCATGGTTTCGCGGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCAtt                                                                                                   <  2:2338818/150‑1 (MQ=255)
                                                    cGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTTCAtt                                                                                                   >  1:3330379/1‑150 (MQ=255)
                                                     ggCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCAtta                                                                                                  >  1:1700564/1‑149 (MQ=255)
                                                     ggCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTc                                                                                                  <  1:762722/150‑1 (MQ=255)
                                                        cTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGAc                                                                                               <  1:4541374/150‑1 (MQ=255)
                                                        cTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGAc                                                                                               <  1:4056139/150‑1 (MQ=255)
                                                            cATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATTATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgc                                                                                           <  1:2783721/150‑1 (MQ=255)
                                                            cATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgc                                                                                           <  1:2115504/150‑1 (MQ=255)
                                                            cATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgc                                                                                           >  2:2273666/1‑150 (MQ=255)
                                                            cATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgc                                                                                           <  1:2875547/150‑1 (MQ=255)
                                                             aTCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgct                                                                                          >  1:3053406/1‑150 (MQ=255)
                                                             aTCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAAAAATGAATTGCCCGGAGCCAGACGCAGCACAATCTTGCATTCGACGtgct                                                                                          >  2:3095664/1‑150 (MQ=255)
                                                              tCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTTACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTATTGCATTCGACGtgctg                                                                                         >  2:2599233/1‑150 (MQ=255)
                                                               cAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGtgctgc                                                                                        <  1:1638364/150‑1 (MQ=255)
                                                                  cTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGcc                                                                                     >  1:2965456/1‑150 (MQ=255)
                                                                    ttATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTGTCGCGATTCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTAGACGTGCTGCGccgt                                                                                   >  1:1589122/1‑148 (MQ=255)
                                                                     tATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCttt                                                                                  <  1:3725733/150‑1 (MQ=255)
                                                                        ttGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttatt                                                                               >  2:1485489/1‑150 (MQ=255)
                                                                        ttGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttatt                                                                               <  2:2205506/150‑1 (MQ=255)
                                                                        ttGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttatt                                                                               <  1:2308548/150‑1 (MQ=255)
                                                                        ttGAAGAATGGTTTCGCTGATTTCGAACAGTTTGCATATTATCGACTTGATCCACACAGTCGATTTTTATAATTAACTCTATGCCAAAATAATGAATTGCAATGAGCCATAAGCATCACATTATAGCATTCGAAGAGCTGCGAAtttaat                                                                               >  2:2650883/1‑148 (MQ=255)
                                                                          gAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCtttattta                                                                             >  1:4107432/1‑150 (MQ=255)
                                                                           aaGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATAGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTttatttat                                                                            <  1:564134/150‑1 (MQ=255)
                                                                             gCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTAACATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTGTTGCATTAGACGTGCTGCGCCTTTATTTATCa                                                                          >  2:3170359/1‑150 (MQ=255)
                                                                                 ggTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACCCAGTCGATTTTTATCCTTGACGCGATGCGAAAATAATGAATTGCCCTGAGCCAGCCGGAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACcag                                                                      >  2:1584392/1‑150 (MQ=255)
                                                                                   tttCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACcagca                                                                    <  2:1539981/150‑1 (MQ=255)
                                                                                      cGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCCTGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGa                                                                 >  2:1311472/1‑150 (MQ=255)
                                                                                        cTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGaaa                                                               >  2:3911748/1‑150 (MQ=255)
                                                                                         tGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTTCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAAc                                                              >  1:3380969/1‑150 (MQ=255)
                                                                                         tGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAAc                                                              <  2:3130946/150‑1 (MQ=255)
                                                                                         tGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAAc                                                              <  1:4364689/150‑1 (MQ=255)
                                                                                         tGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATAACCAGCAGGAAAc                                                              >  2:4415437/1‑150 (MQ=255)
                                                                                          gATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATTCGAAAATAATGAATTGCCATGAGCCCGACGCAGCACATTCTTTCATTCGACGTGCTGCGCCGTTATTTATCACCAGCAGGAAACg                                                             >  1:2924726/1‑150 (MQ=255)
                                                                                            ttGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGcc                                                           >  2:3918806/1‑150 (MQ=255)
                                                                                               cGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATAATTTACGCGAAGCGCAAATAATGAATTGCCAAGAGCCCGACGCCGCACATTATTTCATTCGACGTGCTGCGCCGTTATTTATAACCAGCAGGAAACGccgtt                                                        >  1:4291030/1‑147 (MQ=255)
                                                                                                gAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGt                                                       <  1:3932650/150‑1 (MQ=255)
                                                                                                     gTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAAAGAAATTCCATGAGCCCGACGCAGCACATTATTGCATTCGACGTGCTGCGCCATTATTTATAACCAGCAGGAAACGCCTTGTCCATa                                                  >  2:1946573/1‑150 (MQ=255)
                                                                                                      tttGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAg                                                 <  1:1396539/150‑1 (MQ=255)
                                                                                                          cTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGc                                             >  2:1721853/1‑150 (MQ=255)
                                                                                                              ttATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCt                                         <  2:3614183/150‑1 (MQ=255)
                                                                                                                aTCGACTTGATCCACACAGTCGATTTTTATCATTGACTCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCGTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCtta                                       >  1:4570057/1‑149 (MQ=255)
                                                                                                                aTCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTc                                       <  2:2718994/150‑1 (MQ=255)
                                                                                                                 tCGACTTGATCCACACAGTCGATTTTTATAATTGACGCTATGCGAAAATAATTAATTGCCATGAGCCAGACGCAGCACAATCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTcc                                      >  1:1089174/1‑150 (MQ=255)
                                                                                                                  cGACTTGATCCACACAGTCGATTTTTATCATATTCGCTATGCGAAAAAAATGAATTGGCATTAGCCAGACGCAGCACATTCTTTCATTAGAAGTGCTGCGCCATTATTTATAACCAGCAGGAAACGCCTAGTACATATAAGCCCCATCca                                     >  2:3603524/1‑150 (MQ=255)
                                                                                                                     cTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAATATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACAt                                  <  1:202870/150‑1 (MQ=255)
                                                                                                                     cTTGATCCACACAGTCGATTTTTATAATTTACGCTATGCGAAAATAAAGAAATGCCATGAGCCAGACGCAGCACATTCTTTCATTAGACCTGCTGCGCCTTTATTTATAACCAGCAGGAAAAGCCATGTCCATATACGCCCCATCCACAt                                  >  1:1306086/1‑150 (MQ=255)
                                                                                                                       tGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATgc                                <  2:2257022/150‑1 (MQ=255)
                                                                                                                           ccACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCTCca                            <  2:3242845/150‑1 (MQ=255)
                                                                                                                             acacaGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCcaca                          <  2:2800106/150‑1 (MQ=255)
                                                                                                                                 aGTCGTTTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGCCGTGCTGCGCCTTTATTTATCACCAGCAGGCAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGaa                      <  1:1941047/150‑1 (MQ=255)
                                                                                                                                 aGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGaa                      <  1:4082957/150‑1 (MQ=255)
                                                                                                                                    cGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAAcc                   >  2:4073406/1‑150 (MQ=255)
                                                                                                                                    cGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAAcc                   <  1:819919/150‑1 (MQ=255)
                                                                                                                                     gATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACct                  >  2:1837221/1‑150 (MQ=255)
                                                                                                                                     gATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACct                  >  1:2408183/1‑150 (MQ=255)
                                                                                                                                        ttttATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTa               >  2:1269573/1‑150 (MQ=255)
                                                                                                                                        ttttATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTa               >  2:300778/1‑150 (MQ=255)
                                                                                                                                        ttttATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTa               >  1:1194284/1‑150 (MQ=255)
                                                                                                                                            aTCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTcc           <  2:3768292/150‑1 (MQ=255)
                                                                                                                                                 tGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGa      >  2:2095123/1‑150 (MQ=255)
                                                                                                                                                   aCGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGaca    >  1:246215/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GACAGATGCCTTCATCGCCTGAGCTTAGAAACGGGTACACAGGCTGGATTTACGGCCTGCCATCAACTTTATTTGAAGCATGGTTTCGCTGATTGCGAACCGTTTGCTGATTATCGACTTGATCCACACAGTCGATTTTTATCATTGACGCTATGCGAAAATAATGAATTGCCATGAGCCAGACGCAGCACATTCTTGCATTCGACGTGCTGCGCCTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACACA  >  CP009273/2004384‑2004682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A