Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F56 I0 R1 543 285.0 9366284 95.7% 8963533 149.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,463,906 C→A 15.1% Q433K (CAA→AAA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,463,9060CA15.1% 388.2 / 19.2 145Q433K (CAA→AAA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base C (25/93);  new base A (22/5);  total (47/98)
Fisher's exact test for biased strand distribution p-value = 6.77e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 151 total aligned reads displayed.

GTAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGC  >  CP009273/2463759‑2464054
                                                                                                                                                    |                                                                                                                                                     
  agtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCaaa                                                                                                                                                    >  2:4578777/1‑149 (MQ=255)
   gtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTTTTTTTTTAAAAAATTaaaaa                                                                                                                                                   >  1:1047823/1‑148 (MQ=255)
   gtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAATTTTTTAAATAAATAAAAg                                                                                                                                                   >  1:1047600/1‑149 (MQ=255)
   gtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAATTTTTAAAATAAATaaaaa                                                                                                                                                   >  1:3252774/1‑148 (MQ=255)
       ctctTTTTTGAATATCTCAATTTTATGTGTCATTTTTCGGTGAAGTATATAGATATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                                                                                               <  2:2540759/149‑1 (MQ=255)
       ctctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                                                                                               <  2:2541009/149‑1 (MQ=255)
          tttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                                                                                                            <  1:82748/149‑1 (MQ=255)
            tttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAAATTAtaaaaaaaataaaaaaaaaaaaaa                                                                                                                                          >  1:2228449/1‑143 (MQ=255)
                gAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAt                                                                                                                                      <  2:2571139/149‑1 (MQ=255)
                gAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAt                                                                                                                                      <  1:3234557/149‑1 (MQ=255)
                 aaTATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATa                                                                                                                                     <  1:3607538/149‑1 (MQ=255)
                  atatCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAAATTTTAAAAAAAATAAAAAAAAAAAAAACaaaaa                                                                                                                                    >  1:4555911/1‑146 (MQ=255)
                     tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTCAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                                                                                                 <  2:2958700/149‑1 (MQ=255)
                     tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                                                                                                 <  2:2959485/149‑1 (MQ=255)
                        cAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTTATTTATAAAAAAAATAAAAATAATAAATAAAATAGAGAttt                                                                                                                              >  2:2754719/1‑147 (MQ=255)
                        cAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTAAAAAAAAAAAAGACAAAAGCGATGt                                                                                                                              >  2:3804447/1‑149 (MQ=255)
                         aaTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTAAAATAAAAAAAAACAATATCGATTTa                                                                                                                             >  2:690997/1‑149 (MQ=255)
                          aTTTTATGTGTCATTTTTCGGGGAATGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATTTaa                                                                                                                            <  2:2746150/149‑1 (MQ=255)
                           ttttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTaaa                                                                                                                           <  1:1317785/149‑1 (MQ=255)
                            tttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTTATTTATAAAAAAAATAAAAAAAAAAAAGACAAAAACGAAGTaaaa                                                                                                                          >  2:3124885/1‑148 (MQ=255)
                             ttATGTGTCATGTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                                                                                                         <  1:512652/149‑1 (MQ=255)
                               aTGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑Ac                                                                                                                      <  1:307288/149‑1 (MQ=255)
                               aTGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑Ac                                                                                                                      <  2:3531204/149‑1 (MQ=255)
                               aTGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑Ac                                                                                                                      <  2:3531369/149‑1 (MQ=255)
                                tgtgTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACt                                                                                                                     <  2:4034617/149‑1 (MQ=255)
                                tgtgTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAAAAAATCAAATAAAAAAAGACAAAAGCGATTTAAATC‑Aca                                                                                                                     >  2:308765/1‑148 (MQ=255)
                                     cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGtt                                                                                                                <  1:1844197/149‑1 (MQ=255)
                                     cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAATTTATAAAAAAAATAAAACTAATAAAAACAAAAACCATTTAAAAC‑AAAAAGtt                                                                                                                >  2:3553287/1‑149 (MQ=255)
                                         tttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTaaa                                                                                                            <  2:645276/149‑1 (MQ=255)
                                           tCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAAtt                                                                                                          <  1:3152808/149‑1 (MQ=255)
                                           tCGGGGAAGGATAGAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAAtt                                                                                                          <  2:4041078/149‑1 (MQ=255)
                                            cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAAAAATTAAAAGAAAACAATACAAAAGCGTTGTAAATC‑AAAAAGTTTAAAttt                                                                                                         >  2:3308273/1‑148 (MQ=255)
                                            cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAATTTATAAAATAATTCAAAAAAATCAATACAAAAACCATGTAAATC‑ACTAAGTTTAAAttt                                                                                                         >  2:3308385/1‑148 (MQ=255)
                                             ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAAATTATAAAAAAATTAAAAGAAAAAAAGACAAAAGCGAATTAAATC‑ACAAAATTTAAAATga                                                                                                        >  1:386140/1‑148 (MQ=255)
                                              gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTgcg                                                                                                       <  1:2120688/149‑1 (MQ=255)
                                                gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTTTAAAATAATTAAAAAAAAAAAATACAAAAACGATGTAAAAC‑ACAAAGTTTTAAATgcgcg                                                                                                     >  1:3076770/1‑149 (MQ=255)
                                                     atatAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAAt                                                                                                <  2:3230555/149‑1 (MQ=255)
                                                        taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAAAAAAAAAAACAAATAAAGAACAAACCGCTTTAAATA‑ACTAACGTTAAAATTCGTGCCACTCaa                                                                                             >  2:1573744/1‑148 (MQ=255)
                                                          gagaGTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGATTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATgg                                                                                           <  1:261772/149‑1 (MQ=255)
                                                             aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTTATTTATAAAAAAAATAAAATAAATAAATACAAAATCGAAGTAAAGC‑ACGAAGTTTAAATTTAGCGCCAAACAAGgcgc                                                                                        >  2:2334428/1‑149 (MQ=255)
                                                                tAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTTATTTTTAAAAAAAATAAAAGAAAAAAAAAAAAAAGACAGGTAAAAC‑AATCAGTTTAAAAATAGCGCCAAGCAGGGCGCGca                                                                                     >  1:4401656/1‑149 (MQ=255)
                                                                 aagcaagcATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAATTTTAAAAATAAATAAAAAAAATAAAAACAAAAAACATTTAAAACAAGAAAGTTAAAATTG‑GCGCCCAAAATGGCGCGcac                                                                                    >  1:2977623/1‑149 (MQ=255)
                                                                 aagcaagcATTTATTTGGAATGTATTTTTCGCTCGACCTTTGATTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac                                                                                    <  1:2425477/149‑1 (MQ=255)
                                                                  agcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca                                                                                   <  2:3643713/149‑1 (MQ=255)
                                                                   gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACaa                                                                                  <  2:2760951/149‑1 (MQ=255)
                                                                     aagcaTTTATTTGGAATTTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc                                                                                <  2:3012748/149‑1 (MQ=255)
                                                                      tgattttttttGGATTTTATTTTTGGTTCGACCTTTTATTATACATAACTGTT‑TTTTTTTTATTTTATAAAATAATTCAAAGAAATAAAGAAAATAGCGATGTAAAGC‑AATATGTTTAATTTGCGCGCCAATCTTGGCGCGCACAAGCt                                                                               <  1:1252889/145‑1 (MQ=255)
                                                                      agcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTGTTTTTAATTTATAAAATAAATCAAAGAAATAAAAAAAAAATCGATGTAAAGC‑CCGAAGTTTAAATTTCGCGCCCATCATGGCGCGCACAACCt                                                                               >  2:2562066/1‑149 (MQ=255)
                                                                          tttatttGGAATGTATTTTTCGTGCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTataa                                                                           <  2:1326597/149‑1 (MQ=255)
                                                                            tatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTataata                                                                         <  2:1066583/149‑1 (MQ=255)
                                                                              tttGGAATGTATTTTTCGTTCGACATTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATAcc                                                                       <  1:722236/149‑1 (MQ=255)
                                                                               ttGGAATGTATTTTTCGTTCGACATTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCa                                                                      <  2:3229807/149‑1 (MQ=255)
                                                                                tGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCaa                                                                     <  2:3344816/149‑1 (MQ=255)
                                                                                 ggAATTTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAAc                                                                    <  2:3035214/149‑1 (MQ=255)
                                                                                  gAATGTATTTTTCGTTCGACCTTTGATTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAAcc                                                                   <  1:4653685/149‑1 (MQ=255)
                                                                                   attGTATTTTTCTTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCGATGTAAAGC‑ACTATGTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCt                                                                  <  1:4540231/147‑1 (MQ=255)
                                                                                     tGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTAAAAGAAATAAATACAAAAGCGATGTAAATC‑ACTAAGTTTAAATTTAGCGCCAATAATGGCGCGCACAAGCGATAATAACAAACTaa                                                                >  2:224750/1‑149 (MQ=255)
                                                                                      gTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑AATAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAt                                                               <  1:94742/149‑1 (MQ=255)
                                                                                       tATTTTTCTTTCGACATTTTCTTATACATAACTTTG‑TTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATTGCTATGTAAAGC‑TCTATGTTTAATTTGCGCGCCAATAATGGCGCGCACAAGCTATAATACCAACCTAAtt                                                              <  1:4176518/149‑1 (MQ=255)
                                                                                       tATTTTTCTTTCGACATTTGCTTATAAATAACAGTG‑TTTTTTTTAATTTATAAAATAATTCAAATAAATCAATACAATAGCGATGTAAAGA‑ACTAATTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAAtt                                                              <  1:1276865/149‑1 (MQ=255)
                                                                                       tATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAtt                                                              <  1:4176535/149‑1 (MQ=255)
                                                                                           tttCGTTCGACATTTGATTATACATAACAGTC‑TTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGAAAATAGCTATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtctc                                                          <  1:2462782/149‑1 (MQ=255)
                                                                                             tcgttcgACCTTTGCTTATACATAACAGTCTTTTTTTTTAATTTATAAAATAATTCAAATAAATAAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAATTTGCGCGCCAATCAGGGCGCGCACAAGCTATAATACCAACCTAATTTctcc                                                         <  1:2836101/149‑1 (MQ=255)
                                                                                             tcgttcgACCTTTGCTTAAACATAACAGTCTTTTTTTTTAATTTATAAAATAATTCAAAGAAAACAAGACAATAGCGATTTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcc                                                         <  1:2835792/149‑1 (MQ=255)
                                                                                                ttcgACCTTTGCTTATACATAACAGTC‑GTTTTTTTAAATTATAAAAAAAATCAAAGAAAAAAAGACAAAAGCGAAGTAAAGC‑ACAAAGGTTAAATTTCGCGCCCAAAAAGGCGCGCCCCAGCGAAAAAACCCACCAAATATatcctcca                                                     >  2:3745257/1‑148 (MQ=255)
                                                                                                 tcgACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                    <  2:169855/149‑1 (MQ=255)
                                                                                                       tttGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                              <  1:3305312/149‑1 (MQ=255)
                                                                                                         ttattATACATAACAGTC‑TTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTg                                            <  1:603737/146‑1 (MQ=255)
                                                                                                          gCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAAAATAGCGATTTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGa                                           <  1:1808053/149‑1 (MQ=255)
                                                                                                            ttATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATCGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACt                                         <  2:2784443/149‑1 (MQ=255)
                                                                                                            ttATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACt                                         <  2:130937/149‑1 (MQ=255)
                                                                                                            ttATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACt                                         <  2:2784487/149‑1 (MQ=255)
                                                                                                            ttATACATAACAGTC‑GTTTTTTTAATTTATAAAAAAAATCAAAGAAAAAAAGAAAAAAAAGATGTAAATC‑ACAAAGTTTAAAATTCGCGCCCAACAAGGCGCGCACCAACTATAAAACAAACCAAAATTATACACCTAATAGAGTGaat                                         >  2:2846879/1‑147 (MQ=255)
                                                                                                             tataCATAACAGTC‑TTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACta                                        <  2:4487983/149‑1 (MQ=255)
                                                                                                                aCATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTatat                                     <  1:616858/149‑1 (MQ=255)
                                                                                                                aCATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTatat                                     <  2:1663455/149‑1 (MQ=255)
                                                                                                                 cATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTATGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtc                                    <  1:956255/149‑1 (MQ=255)
                                                                                                                    aaCAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTcc                                 <  2:4039114/149‑1 (MQ=255)
                                                                                                                    aaCAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTcc                                 <  2:3357039/149‑1 (MQ=255)
                                                                                                                         tC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATa                            <  2:322135/149‑1 (MQ=255)
                                                                                                                            gTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                          >  2:807017/1‑149 (MQ=255)
                                                                                                                             tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                         <  1:2313082/149‑1 (MQ=255)
                                                                                                                                 tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGc                     >  1:2602782/1‑149 (MQ=255)
                                                                                                                                    aaTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                  >  2:2111518/1‑149 (MQ=255)
                                                                                                                                          taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc            >  1:3367028/1‑149 (MQ=255)
                                                                                                                                           aaaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATATAATTGATGTATTGACt           >  2:2780064/1‑149 (MQ=255)
                                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa          <  2:1920286/149‑1 (MQ=255)
                                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa          >  2:409902/1‑149 (MQ=255)
                                                                                                                                             aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt         >  1:4402303/1‑149 (MQ=255)
                                                                                                                                                aatTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa      >  1:297408/1‑149 (MQ=255)
                                                                                                                                                 atTCAAAGAAATCAAGACCATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa     <  2:1047600/149‑1 (MQ=255)
                                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa     >  2:1790134/1‑149 (MQ=255)
                                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa     >  2:2329902/1‑149 (MQ=255)
                                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa     <  2:3252774/149‑1 (MQ=255)
                                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa     <  2:1047823/149‑1 (MQ=255)
                                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa     <  1:1391840/149‑1 (MQ=255)
                                                                                                                                                  ttCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt    >  1:3100325/1‑149 (MQ=255)
                                                                                                                                                  ttCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt    >  2:2927181/1‑149 (MQ=255)
                                                                                                                                                   tCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATg   >  2:1337107/1‑149 (MQ=255)
                                                                                                                                                    cAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc  >  1:2005307/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GTAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTC‑GTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGC‑ACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGC  >  CP009273/2463759‑2464054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A