Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F27 I0 R1
|
322 |
127.1 |
2757226 |
91.8% |
2531133 |
223.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
433,649 |
T→G |
36.6% |
G65G (GGT→GGG) |
ribD → |
fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 433,649 | 0 | T | G | 36.6%
| 24.1
/ 10.1
| 57 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| Reads supporting (aligned to +/- strand): ref base T (10/23); new base G (15/7); total (27/30) |
| Fisher's exact test for biased strand distribution p-value = 1.20e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.18e-01 |
AGAATTTGGCGAAGAGATCGC‑GCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAGGCTTTCTC > NC_000913/433415‑433871
|
aGAATTTGGGGAAGAG‑TCGCGGCGCCTGGAGTACTAAGCCGGCGGGGAAGAGTATTAAAGGGCGGGGGCGCTAAAGCGGGGGCAC‑C‑GAGGACGTTTCACCACGCACCCCAACCCGAATGG‑CGGGTGCATCATTGTCAAAGATGGCGAAA‑TGGTCGGTGAAGTTTACCACCAA‑CGTGCGGGTGAACC‑AAATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGa < 2:276285/239‑1 (MQ=255)
tttGGCGAAGAGATCGC‑GCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGGGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAAC‑CAAAAGG‑GGGAccc > 1:492089/1‑237 (MQ=255)
tttGGCGAAGAGATCGC‑GCGCCTGGAGGACTAAGCCGTGCAGGAAGAGTTTTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGAGGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑AAAAGGT‑GCGACCGc < 1:1032546/239‑1 (MQ=255)
tGGCGAAGAGATCGC‑GCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGGATGGC‑GGGTGGAAAAGC‑CAAAAGG‑GCGCCGGccc > 1:772222/1‑238 (MQ=255)
ggCGAAGAGATCGC‑GCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAGAAAGC‑CAAAGGG‑GGGACCGcc > 1:963111/1‑237 (MQ=255)
ccTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAGC‑CAAAGGG‑GCGACCGCCTagttccacccccaac > 1:807831/1‑222 (MQ=255)
ggggaCTAAGCCGGGCAGGGAGAGTTTTACAAGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GGGGGCGTTTTACCACGCAGCCCAACCCGAATGT‑CGGGTGCGTCATTGTAAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAG‑CGTGGGGGTGAACC‑AAATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑AAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTa < 1:1241767/236‑1 (MQ=255)
taggcggggaggggggggttttACAGGGGGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGA‑TTTTTACCCCGCATCCCACCCCGAATTG‑CGGGTGCGTCATGGCCAAAGAGGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGGGCGGGTAAACC‑ACATGCCGAAGTACCCGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCcatca < 2:1182181/218‑1 (MQ=255)
tGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGGAAAATC‑CCAAAGG‑GGGACCCCCTATTGCCCA‑CTCGGACCCTgatgccccactgagcg > 1:454453/1‑223 (MQ=255)
tGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAGC‑CCAAGGT‑GCGACCGCCCATTTCACA‑CTCGAACCCGGTAGCcatccatggcag > 1:117070/1‑231 (MQ=255)
tGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAGC‑CAAAGGG‑GCGACCCCCCATTTCCCA‑CTCGAAACCTGTAGcctgtccctttt > 1:376933/1‑228 (MQ=255)
tGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGCAAAAGC‑CCAAAGA‑GGGGCCCCCCACAGCACA‑CTCGCAccccataacaaacaacggtga > 2:669240/1‑221 (MQ=255)
ggaggtgggtttttactGGCGCGGGGGCTAAAGGTGGGGGAA‑CGGGGGACGTTTTCCCCCGCATCCAACCCCGATGGT‑CGGGTGCGGTATAGTAAAGGGGGACAAAG‑TGGTGTGAGAAGGTTACCCCCAA‑CGTGGGGGTGAACC‑ACATGCGGAAGTCCCCGCGGTGCTTTGGGG‑GGGTAAAAAAGC‑AAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTa < 2:24573/223‑1 (MQ=255)
cAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGC‑CAAAGGG‑GCGACCCCCCATGTCCCA‑CCCCAACCCTGTAGCcatccatgacgta > 1:568770/1‑229 (MQ=255)
gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGC‑CAAAGGG‑GCGACCGCCTATGTCCAA‑CTCGAAACCTGTAGCCACCATGGTCGTaacgccccc > 1:174216/1‑230 (MQ=255)
ttttACATGCCGCGGTCGTTAAAG‑TGGGACAAGC‑GGGGTCGTTTGACCACGCACCCCACCCCGAATGG‑GGGGTGCGGTATTGACAAAGAGGGAGAAA‑TGGTGGGGGAGGTTTACCACCAC‑GGGGCGGGTAACCC‑CAAGGCCGAATTCCCGGCGTGGCGTATGGG‑GGGTAAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:395717/237‑1 (MQ=255)
ttaacaggCGGGGGCGGTAAAGGTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCCCCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCt < 1:236545/233‑1 (MQ=255)
aCATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGG‑GCGACCGCCCATGTCCCA‑CTCGAACCCTTGAGCCATCATGGCGGTACGCCCCCGTGCtgt > 1:70454/1‑239 (MQ=255)
ggCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAAC‑CAAAAGG‑GCGACCGCCCATGTCACA‑CTCGCACCCCGTAGCCATACTGGTCGTACGCCACCGGGCTGTGAc > 1:359011/1‑238 (MQ=255)
gggcgGGCGTAAAAGGTGGCGCAA‑C‑GGGGCGGTTTTACCACGCATCCAAACCCGAATGG‑CGGGGGCGGCATTGTCAAAGATGGCGAAA‑TTGTCGATGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTAGGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGAc < 1:1155546/235‑1 (MQ=255)
cgcgGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGGAAAAGC‑CAAAGGT‑GCGACCGCCCATGTCACA‑CTCGAACCCTGTAGCCACCAGGGTGGTACGCCCCCggcgctggacgc > 1:19772/1‑227 (MQ=255)
cgcgGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAGC‑CAAAAGG‑GGGACCGCCTATTTCCCA‑CTCGGACCCTGTAGCCATCATGGGCGTACGCCACCGTGCCGTGACGc > 1:368718/1‑238 (MQ=255)
cgcgGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAAC‑CAAAGGG‑GCGACCCCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTAAGCCACCGGGCTGGGACGc > 1:1126619/1‑238 (MQ=255)
cgGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGG‑GCGACCGCCTATGTCACA‑CTCGAACCCCGAAACCCTCATGGTCGGACCCCCCCCTGCTGTGACGccc > 1:1324212/1‑236 (MQ=255)
cgGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAAC‑CAAAAGT‑GCGACCCCCCATGTCACA‑CTCGAACCCCGTAGCCATCATGGGCGTACGCCCCCCGCCTGTGCCGCAc > 1:508101/1‑238 (MQ=255)
cgGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGATGAAGGTTACCACCAA‑CGTGCGGGGGAACC‑ACATGCCGAAGTACACGCGTTGCGAATGGCGGGGGGAAAAACA‑CAAAGG‑‑GGGACGCCCTATGTCACA‑CCCCAACCCTCTAGCCCCAATGGTCGTACCCCACCCCGCTGTGGCGAAc > 2:1155546/1‑238 (MQ=255)
ggCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAGC‑CCAAAGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCAAGGGCGTACCCCCCCGTGCTGTGACGCACTCATCCCCCCTGGCg > 1:530131/1‑239 (MQ=255)
ggggtcGTTTTCCCCCCCCTCCCACCCCGAATGG‑GGGGGGGAGCATTGCAAAAGAGGGGAAAG‑TTGCCGGAGAAGTTTACCACCAA‑CGGGGGGGGGAACC‑ACGGGCGGAAGTACCCGCGTTGCGTAGGGG‑GGGTGAAAAAGC‑AAAAGGT‑CCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAgcgcgc < 2:508101/234‑1 (MQ=255)
ttccccccccccccACCCCGAATGG‑GGGGTGCGTAATTG‑CAAAAGTGGGGAAA‑TTTGCGGGTGGGGTTTCCCCCAAGCGGGGGGGGAAACC‑CCATGCCAAAGCCCACGCTTGGCGTTGGGG‑GGGTAAAAAAGC‑CAAGGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGcc < 2:1369922/228‑1 (MQ=255)
ctccccAACCCGATTGG‑GGGGTGGTTCTTTGTCAAAGGTGGCAAAT‑TTGGCGGTGAGGGTTGCCCCCAC‑CGGGCGGGTGACCC‑ACGGGCGGAAGTACGCGCGTTGCGTAGGGC‑GGGAGAAAAAGC‑AAAGGGG‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 2:70454/236‑1 (MQ=255)
caccccAA‑CCGAATGGCCGGGGGCGCAATTGTCAAGAATGGGAAAA‑TTGCCGGTGAAGGTTCCCACCAA‑CGGGCGGGTAAACC‑CAATGCCGAAGTCACCGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 1:955844/236‑1 (MQ=255)
cATCCAAACCGGAATGG‑CGGGGGCGTCATGGTAAAAGAGGGCGAAA‑TTGTCGGTGAAGGTTACCCCCAA‑CGTGGGGGGAACCC‑CCATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑AAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 1:753640/239‑1 (MQ=255)
ccccccccagatactgggggTGGTTCAGTGTAAAGGAGGGAGAAA‑TTGGTGGTGATGTTTCCCACCAA‑GGTGCGGG‑GAACCGACTGGCCGAAGTCCGCGTGTTGCGAAGGGG‑GGGTGAAAAATC‑AAGAGGG‑CAGACCGCCTATGTCACA‑CTCGAACCCGGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCaa < 2:142203/222‑1 (MQ=255)
aTGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATAATGGTGGTACCCCCCCGGGCTGTTACGCACCCCACGCCCCTGGCGTAGCGCGCGTGGGTGCCCCGAGGCAAAGTCCTAAccc > 1:1175961/1‑238 (MQ=255)
tggggggtggtttttGTAAAAAGTGGGGAAATTTGGCGGGGAAGTTTCCCCCCAA‑GGGGCGGGTAACCC‑ACATGCCGAAGTACCCGGGTTGCGTATGGG‑GGGAAAAAAAGC‑AAAGGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGc < 2:174216/226‑1 (MQ=255)
cGTCATTGAAAAAGGTGGCGAAT‑TTGTCGGTGAAGGTTACCCCCAA‑GGGGCGGGTAAACC‑CAATGCCGAAGTACCCGGTTGGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCt < 1:1186953/238‑1 (MQ=255)
cATTGAGAAAGAGGGAGAAT‑TTGTCGGTGCGGGTTCCCGCAAA‑GGTGGGGGTGACCC‑CCACGCCGAGGTCCACGCGTTGCGTAGGGC‑GGGGGAAAAGGC‑CAAGGGG‑GCAACCGCCTAGGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGc < 2:235245/239‑1 (MQ=255)
tGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGTAAAACC‑CAAAATG‑GCGACCGCCTATGT‑ACACCTCGAACCCTGTATCCCTCCTTGTTGCACGCCCCCGTGCTGTTACGCACCCCTCTCCCCCTGCGTAGCACGCGTGGTTGCCTCGATGCCCGAACCCAACCCCCAAGG‑CGCGGGGCgcg > 2:166777/1‑237 (MQ=255)
gTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAAC‑CAAAAGG‑GCGGCCGCCTTTGTCACA‑CTCGTAACCTTTAGCCATCATTGTCGACCGCCCCCCTGGTGTGACGCCCTCACCGCCGCTTGCGTAGCGCCGGGGGGTGCCCCGGTCAACGACCCTAACCCCCAGGG‑CGCggggggggg > 2:1305233/1‑234 (MQ=255)
cGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCCCAGGG‑CGCTGGGCGTGGGCTTTACCg > 1:538600/1‑237 (MQ=255)
aaaa‑TTCGCGGTGAAGGTTACCACCAG‑CGGGCGGGGGAACC‑CAATGCCGAAGTACCCGCTTTGCGTAGGGG‑GGGTGAAAAGCC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTc < 1:1305233/237‑1 (MQ=255)
ttACCACCAA‑CGGGCGGGTGAACC‑ACATGCCGAAGTACACGCGTGGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 1:435474/180‑1 (MQ=255)
gtACCCCCAA‑CGGGGGGGGGAACC‑ACATGCCGAAGTACCCGGGTTGCGTATGGC‑GGGTAAAAAAGC‑AAAAGGT‑GCGACCGCCTATGTCACG‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCAtt < 1:951299/237‑1 (MQ=255)
ggcgggggTGACCC‑ACAGGCCGGAGTACCCGGGGGGCGGATGGG‑GGGTGAAAACGC‑CAGGGGT‑GCGCCCGCCTATGTCACC‑CTCGAACCCTGTAGCCCTCATGGTCGTACGCCACCGTGCTGTGACGCCCTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCa < 2:960969/234‑1 (MQ=255)
cgggggggTAAACC‑CAAGGCCGAAGTCCCCGGGTGGCTTATGGG‑GGGTAAAAAACC‑CAAAGGG‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCa < 1:975689/234‑1 (MQ=255)
cgggCGGGTGAACC‑AAGTGGCGAATGACGGGTTTGGCTTAGGGC‑GGGTAAAAACGC‑AAAAGGT‑GCCACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTAGCATTGACGTCAGCCa < 1:799241/236‑1 (MQ=255)
gggTGAACC‑ACAGGCGGAA‑TTCCCGGGTTTGGTGAGGG‑GGGGAAAAAACC‑CAAAGGTGGCAACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGGCGTACGCCCCCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGc < 2:538600/238‑1 (MQ=255)
gggggaccccgttGCCAAGGTACACGGGTGGCGTTGGGG‑GGGTGAAAAACC‑CAAGGGG‑CCACCCGCCTTGTTCACC‑CGCGAACCCTGTGGCCATCAGGGTCGTACGCCACCGTGCTGTGGCGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGc < 2:359011/226‑1 (MQ=255)
gTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGC‑CAAAGGT‑GCGACCGCCCATGTCACA‑CTCGAACCCTGTAACCATCATGGTCGTACGCCACCGGGCTGTGACCCCCTCATCGCCCCCGGCGTAACGCGCGGGGTTGCCCCGGTGCCAGATCCTAACCCCCCGGTACCCGGGGCG‑GGGCTTTACCGTCTGCAACAGGCTGGCCTTGAGGGCAGCCACGGcccg > 2:1117436/1‑237 (MQ=255)
aagaagacacgggCGTATGGC‑GGGTGAAAAAGC‑CAACGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCg < 1:1363463/227‑1 (MQ=255)
aaccgggTTGCATATGGC‑GGGT‑AAAAAGCACAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAg < 1:930248/232‑1 (MQ=255)
tgggggggTAAAAAACC‑CAAAGTG‑CCCACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAgg < 1:105846/234‑1 (MQ=255)
gTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt > 1:752538/1‑117 (MQ=255)
gTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt < 2:752538/117‑1 (MQ=255)
gTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCCCCGCTGGCGTAGCGCGCGTGGGTGCCTCGCTGCAAGATCCTAACCCCCCGGT‑GGCTGGGCGGGGACTTTCCCGTCTGCACAAGGCGGGCCTTGACGTCCGCCCCGGCCTGAGGGTGGGTGGAGCCGGGGAAATGaaaatgtctctttta > 2:1363463/1‑226 (MQ=255)
aaaGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCcatca > 2:247156/1‑44 (MQ=255)
aaaGGG‑GGGACCGCCTATGTCACA‑CTCGAACCCTGTAGCcatca < 1:247156/44‑1 (MQ=255)
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AGAATTTGGCGAAGAGATCGC‑GCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAA‑C‑GAGGACGTTTTACCACGCATCCCAACCCGAATGT‑CGGGTGCGTCATTGTCAAAGATGGCGAAA‑TTGTCGGTGAAGGTTACCACCAA‑CGTGCGGGTGAACC‑ACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGC‑CAAAGGT‑GCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGT‑CGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAGGCTTTCTC > NC_000913/433415‑433871
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
