Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F9 I0 R1 113 83.2 1840812 91.6% 1686183 224.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,132,787 A→C 100% I204S (ATC→AGC)  wcaA ← putative glycosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,132,7870AC100.0% 256.4 / ‑6.7 85I204S (ATC→AGC) wcaAputative glycosyl transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base C (41/42);  minor base T (0/1);  total (42/43)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAGACTTCGCCCTGGCAA  >  NC_000913/2132557‑2133023
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                            
tttgggccccccGAAACCCCGCACCCAGGCGTTGCCCTTTTCCCACCGACAGCTGCGGCAGCAAAGTGTGCCAGGTCATTCTTTTATTGGGGATCTGGTAGAGGGTAAACATCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc                                                                                                                                                                                                                                      <  2:791431/232‑1 (MQ=255)
tttAGCGCCCCCGAATACCATCAGCCGGGCGTTTGCCGTTACGCGCCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc                                                                                                                                                                                                                                      <  2:262152/239‑1 (MQ=255)
tttAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc                                                                                                                                                                                                                                      <  1:279555/239‑1 (MQ=255)
tttAGCGCCCCCGAACTCCGACAGCCAGACGTTTGCCTTTACGCCCCGACAGCGAGGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc                                                                                                                                                                                                                                      <  2:324326/239‑1 (MQ=255)
       cccccGAATACCTTACGCCCGACGTTTTGCTTTACGCACCGACAGCGGCGTCAGCAAAGTGCGCCAGGTCATTCGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCtctt                                                                                                                                                                                                                               <  2:116098/239‑1 (MQ=255)
        ccccGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAACCAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGAACCCGGAGAATTTTTTCGGTGACGAGGCGATCTGCATTTCACCGCGATTGATATTCAGGCTCTGCGTGCCctct                                                                                                                                                                                                                                >  1:434597/1‑237 (MQ=255)
         cccGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCtcttct                                                                                                                                                                                                                             >  1:516519/1‑239 (MQ=255)
          ccGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTa                                                                                                                                                                                                                            >  1:699385/1‑239 (MQ=255)
          ccGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCCCCCCTTTTa                                                                                                                                                                                                                            >  1:401035/1‑239 (MQ=255)
                 ccATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCa                                                                                                                                                                                                                     <  1:452850/239‑1 (MQ=255)
                   aTCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACg                                                                                                                                                                                                                   <  1:574858/239‑1 (MQ=255)
                    tCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACgg                                                                                                                                                                                                                  >  1:791574/1‑239 (MQ=255)
                     gcgccgatcGTTTGCCTTTTGCCACCGGCAGCAGGTTCAGAAAAGTGCGGCAGGTCTTACTTTTATTGCGGATCGGGTAGGGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTGGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGt                                                                                                                                                                                                                 <  2:75243/231‑1 (MQ=255)
                       gtcAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGACATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTGGTCTT‑TGTGCTTTCGGTAAAAGTGGAAGTACCGGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCCCCGTGATTGATATGATGGCTCTGCGTCGCGCCTCTTCCTTTCCACGGGTc                                                                                                                                                                                                               >  2:135738/3‑239 (MQ=255)
                            aCGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGAATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGCATTTGTCTT‑TGTACTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGCTGACGCGGTGGTCTGCATTTCACCGTGTTTGCAATTCAGGCTCTGCGTCGCGTTTCTTACTTTcccagggtccccg                                                                                                                                                                                                           >  2:14396/1‑227 (MQ=255)
                             cGTTTGCCGTTGCGCCCCGACAGCGGCGTAAGCAAAGTGCGCCAGGTCATACGTTTAGTGGGGATCTGGTAGAGGTGAAACAGCGGAGATTTTTTGCTGGCGCGG‑ACGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGATAATGTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGTTTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCg                                                                                                                                                                                                           <  2:139997/237‑1 (MQ=255)
                                  gCCGTTACACACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCTGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTcca                                                                                                                                                                                                    <  1:591187/239‑1 (MQ=255)
                                              cggaagaggcGTAAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGAGCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCa                                                                                                                                                                                        <  1:567538/231‑1 (MQ=255)
                                                aCAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCCCCGTGATTGGTATGCAGGGTCTGCGTGGCCTCTTCTACTTTCCACGGTTCGCCGGACTCCACCACCACCCGCAgg                                                                                                                                                                                      >  2:262589/1‑239 (MQ=255)
                                                aCAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTTTACTTTCCACGGTTCGCCGAACTCCACCCCCACCCGCAgg                                                                                                                                                                                      >  2:674124/1‑239 (MQ=255)
                                                     cgctgcAGCAAAGGTGGCCAGGTCATACGTTTATTGCTGATCTGGTAGGTGTTAAAACGGTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAATTCCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGa                                                                                                                                                                                  <  2:160064/233‑1 (MQ=255)
                                                      gcGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGCGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGCACTCCACCACCATCCGCCGGAAGGTg                                                                                                                                                                                >  1:365399/1‑239 (MQ=255)
                                                          cAGCAAAGTGGGGCGGGTTATAGTTTTTTTGAGGTTGTGGGAGGGGGTAAACAGCGGATATTTTTGGCTGGCGCGG‑TCGAATTTGTCTT‑TGGGCTTGCGGTAAAAGTGGAAGTACCGGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCg                                                                                                                                                                             <  2:401035/238‑1 (MQ=255)
                                                           aGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCAACCACCACCCCCAGGAAAATGTCGTa                                                                                                                                                                           >  1:287616/1‑239 (MQ=255)
                                                                    cgcCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCtgtg                                                                                                                                                                   >  1:786536/1‑238 (MQ=255)
                                                                           ttatgcgttttttgggtttttGGTAGGGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCttt                                                                                                                                                            <  2:875255/218‑1 (MQ=255)
                                                                               tcggttttggcggtgtggttAGGGGGTAAACAGCTGATATTTTTGGCGGGCGCGG‑GCGAAGTTGTCTT‑TGGGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCGCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGtt                                                                                                                                                       <  2:293580/220‑1 (MQ=255)
                                                                                     aTTGCGGATCTGGTAGAGGGTAAAAAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTAt                                                                                                                                                 <  1:303184/239‑1 (MQ=255)
                                                                                     aTTGCGGAGCTGGTAGAGGGTAAACAGCTGATATGTGTTGCTGGCGCGG‑CCGAATTTGTCTG‑TGTGATTGCGGTAAAAGTGGAAGTACCCGGATAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCGCGGTTCGCCGTGCTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTAt                                                                                                                                                 <  1:584700/239‑1 (MQ=255)
                                                                                       tggggATTTTGTAGAGGGTAAACATCTGATATTTTTTGCTGGCGCGG‑TCGAATTTTTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTGTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCg                                                                                                                                               <  2:791574/236‑1 (MQ=255)
                                                                                           gATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCTCCGTACTCCACCACCATCCGCAGGAAGATTTCGTAATCCTGTCCCGCTTTCAGTTCGGGATCGaaca                                                                                                                                           >  2:303184/1‑239 (MQ=255)
                                                                                           gATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGc                                                                                                                                                                                         <  2:308942/193‑1 (MQ=255)
                                                                                           gATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGc                                                                                                                                                                                         >  1:308942/1‑193 (MQ=255)
                                                                                                  tAGAGGGTAAACAGCTGATTTTTGTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACAct                                                                                                                                     <  1:565162/238‑1 (MQ=255)
                                                                                                      gggTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGAATCGAACAAAAACTCTTTg                                                                                                                                >  1:429555/1‑239 (MQ=255)
                                                                                                      gggTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGCCGTAATCCTGTGCCCCTTTCAGTTCGGTATCGAAAAAAAACCCTTTg                                                                                                                                >  2:408705/1‑239 (MQ=255)
                                                                                                       ggTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGACAGTGTCGTAATCCTGTGCCGCTTTCAGTTCGGGATCGAACAAACACCATTTGa                                                                                                                               >  1:893995/1‑239 (MQ=255)
                                                                                                         tAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAAAACTCTTTGaa                                                                                                                              >  1:338757/1‑238 (MQ=255)
                                                                                                           aacagttttttttttttGTTGGGGCGG‑TTGAATTTTTTTT‑TGTGCTTGCGGTAAAAGTGGAAGGTCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACg                                                                                                                           <  2:429555/228‑1 (MQ=255)
                                                                                                           aaCAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCg                                                                                                                                                                                                           >  1:512269/1‑159 (MQ=255)
                                                                                                           aaCAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCg                                                                                                                                                                                                           <  2:512269/159‑1 (MQ=255)
                                                                                                           aaCAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTTTGCCGCTTTCAGTTCGGTATCGAACAAACACCCTTTGacag                                                                                                                            >  2:430140/1‑235 (MQ=255)
                                                                                                           aaCAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCACCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCCGTATCGAACAACAACACTTTAAAAca                                                                                                                           >  2:465746/1‑238 (MQ=255)
                                                                                                                 tGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTTCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGcc                                                                                                                         <  1:137093/235‑1 (MQ=255)
                                                                                                                 tGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATg                                                                                                                      >  1:604187/1‑238 (MQ=255)
                                                                                                                 tGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACCCTTTGAAACGCCATg                                                                                                                      >  1:882582/1‑238 (MQ=255)
                                                                                                                  gtttttttttTCGGGCGCGG‑TCGAATTTGTTTT‑TGGGCTTGCGGTAAAAGGGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc                                                                                                                    <  2:786536/235‑1 (MQ=255)
                                                                                                                  gttgttttttGGTGG‑GCGGTTGGAATTTGTGTTGTGTG‑TTGGCGTAAAAGTGGAAGTTCCCGGAGAATTTTTGCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc                                                                                                                    <  2:338757/235‑1 (MQ=255)
                                                                                                                  gATATTTTTTGCGGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc                                                                                                                    <  1:449506/239‑1 (MQ=255)
                                                                                                                   gttttttttCGTGGCGCGG‑TCGTATTTGTTTT‑TGTGCTTGCGGTAAAAGTTGAAGTTCCCGGAGAAGTTTTGCGGTTACGAGGTGGTCTGCATTTCCCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGccc                                                                                                                   <  2:918325/236‑1 (MQ=255)
                                                                                                                   atatTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGAGTCGCCTCTTCTACTTTCCCCGGTTGGCCGTACTCCACCCCCATCCCCAGGAAGATGTCGTCATCCTGTGCCGCTTTCAGTTCGGTATCCAACAAACACCCTTTGAAAGCCCAGGccc                                                                                                                   >  2:184739/1‑239 (MQ=255)
                                                                                                                                  gccg‑TCGATTTTTTTTT‑TTTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGGCGAGGTGATCTGCATTTCCCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCCCGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTgg                                                                                                     <  2:319174/235‑1 (MQ=255)
                                                                                                                                    gg‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGtt                                                                                                   <  1:674124/238‑1 (MQ=255)
                                                                                                                                    cggtggatgttgtctt‑ttgtcttGCGTTAAAAGTGGAAGTTCCCGGAGAATTTTTTCGGTGACGGGGTGATCTGCCTTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGtt                                                                                                   <  2:699385/230‑1 (MQ=255)
                                                                                                                                     g‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTg                                                                                                  >  1:851103/1‑238 (MQ=255)
                                                                                                                                      gttgAATTTTTTTT‑TTTGTTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGAGCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGc                                                                                                 <  2:882582/236‑1 (MQ=255)
                                                                                                                                       tCGAATTTGTCTT‑TGTGCTTGGGGTAAAAGTGGAAGTTCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGc                                                                                                 <  1:262589/238‑1 (MQ=255)
                                                                                                                                               ttCTT‑TGTGGGTGGGGTAAAAGGGGAAGTCCCCGGAGAATTGTTTCGGTTAAGAGGTGCTCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGatat                                                                                        <  2:382347/238‑1 (MQ=255)
                                                                                                                                                 cTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCt                                                                                                                                                              >  1:804168/1‑167 (MQ=255)
                                                                                                                                                 cTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCt                                                                                                                                                              <  2:804168/167‑1 (MQ=255)
                                                                                                                                                 cTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTCTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCAGGCCCAGGCAAAGACCTGGTTGCCAATGATAtt                                                                                       >  1:226051/1‑238 (MQ=255)
                                                                                                                                                     ttgttgtggggTAAAAGGGGGAATGCCCGGAGAATTTTGTCGGTGGCGGGGTGATCTGCATTTCCCCGTGATTGATAGGCAGGCCTTTGGTCCCCTCTGCTACTTTCCACGGTGCGCCGTCCTCCACCACCTCCCGCAGGAAGAGGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACGCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGt                                                                                   <  2:893995/230‑1 (MQ=255)
                                                                                                                                                      gtgCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCAACGGTTCGCCGTACTCCACCACCATCCGCAGGATGATGTCTTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACGCTTTGAAACGCAATCCCCCGGTAAAGACCTGGTTACCCATGATATTGCGtt                                                                                  >  1:491912/1‑239 (MQ=255)
                                                                                                                                                           tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAg                                                                             >  1:455238/1‑239 (MQ=255)
                                                                                                                                                                        gAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGCAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAAACCTGGTTGCCAATGATATTGCGTTTGTAGAAAAGggggcggg                                                                >  2:658644/1‑237 (MQ=255)
                                                                                                                                                                          agctcccGGAGAATTTTTTCGGTGACGAGTGGATCTGCATTTCACCGTGATTGATAGGCAGGTTCTGCGTCGCCTTGTCTACTTGCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGa                                                               <  1:430140/234‑1 (MQ=255)
                                                                                                                                                                              cccGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGCACAACCACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATAATATTCCGTTTGAAGAAAAGGGGGGGAGAAAACg                                                          >  2:452481/1‑239 (MQ=255)
                                                                                                                                                                              cccGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAAAACg                                                          >  1:625651/1‑239 (MQ=255)
                                                                                                                                                                              cccGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCCCTTTCAGTTCGGTATCGAACAAAAACTCTTTGAAACGCCATGCCCCGGTAAAGACCTGGTTCCCAATGTTATTGCGTTTGTCGAACAGGCGGCGGGaaaaag                                                          >  2:728900/1‑235 (MQ=255)
                                                                                                                                                                               ccGGGGTATTTTTTCGGTGGCGGGGTTTTCTGCATTTCCCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACgg                                                         <  2:851103/239‑1 (MQ=255)
                                                                                                                                                                               ccGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCCCCGTGATTGATATGCAGGCTCTGGTTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACgg                                                         <  1:111705/239‑1 (MQ=255)
                                                                                                                                                                                 ggAGAATTTTTGCGGGGAGGATGTGATCTTCATTTCGCCGTGGTTGATATGCAGGCTCTGCGTCGCCTTGTCGACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCg                                                       <  2:287616/239‑1 (MQ=255)
                                                                                                                                                                                                  aCGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATCCAGCGGc                                      >  1:200877/1‑239 (MQ=255)
                                                                                                                                                                                                             tGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAACCACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGAGATTGCGTTTGTAGAACAGGCGGCGGGAATCCGGCGGTTTGGGTTCCACGGGTAAGCTTGCCgg                           >  1:620091/1‑239 (MQ=255)
                                                                                                                                                                                                              tgcttttcccttgttttatttGCCGGCTCTGCGTGCCCTTTGTTCCTTTCCCCGGTTCGCCGTACTCCCCCCCCATCCGCAGGAAGATGTCGTAATCCTGGGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGt                          <  2:516519/219‑1 (MQ=255)
                                                                                                                                                                                                              gtctttCCCCGTGATTGATGTTCAAGCTCTGCGGCCGCTCTTCTGCTTTCCCCGGTTCGCCGGACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGt                          <  1:408705/236‑1 (MQ=255)
                                                                                                                                                                                                              gcttttcccctgtattgttTTGCAGGCTCTGCGTCGCCTTTTTTACTTTCCACGGTTCGCCGTACTCCACCTCCAGCCGCAGGAAGATGGCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGt                          <  2:226051/226‑1 (MQ=255)
                                                                                                                                                                                                                    cACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa                    >  1:283810/1‑239 (MQ=255)
                                                                                                                                                                                                                       cGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATCTTGCGTTTGTAGCACAGGCGGCGTGATAACGGCGATTTGGGATACAGCTGCAAGCTTGCCGGTTGGGAATAg                 >  1:70313/1‑239 (MQ=255)
                                                                                                                                                                                                                         tgattgatATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCCAGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTGAAACAGGCGGCGTGAATACGGCGATTTTGGTTACAACGCCAAGCTGGCCgggggggcaaaa                 >  2:355827/1‑227 (MQ=255)
                                                                                                                                                                                                                         tgattgatATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAg                 >  1:768613/1‑237 (MQ=255)
                                                                                                                                                                                                                         tgattgatATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGGATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGGGAATACGGCGATTTGGGAAACAGGGGCGAACTTGACGGTTggggaaaaaa               >  2:577059/1‑232 (MQ=255)
                                                                                                                                                                                                                          gattggtATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAGACt              <  1:613710/239‑1 (MQ=255)
                                                                                                                                                                                                                                   gCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGAGTACACGGGCAAGCTTGCCGGGTGGGAATAGACTTCCCCCTgg     >  2:277965/1‑239 (MQ=255)
                                                                                                                                                                                                                                     aGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGT‑AAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGGTACAGCGGCAAGCTTGCCGGTTGGGAATAGACTTCGCCCTGGCaa  >  1:619094/1‑239 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                            
TTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGG‑TCGAATTTGTCTT‑TGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAGACTTCGCCCTGGCAA  >  NC_000913/2132557‑2133023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A