Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F27 I0 R1
|
83 |
86.1 |
2053078 |
89.1% |
1829292 |
215.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,132,787 |
A→C |
100% |
I204S (ATC→AGC) |
wcaA ← |
putative glycosyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,132,787 | 0 | A | C | 100.0%
| 190.9
/ ‑6.7
| 75 | I204S (ATC→AGC) | wcaA | putative glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); major base C (35/36); minor base G (1/1); total (36/39) |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTT‑GGGAATAGACTTCGCC > NC_000913/2132557‑2133016
|
tttAGGCCCCCCGAATCCCAACAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATTCGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc < 1:160566/239‑1 (MQ=255)
gcgCCGGAAGTTTACCGTTACGCTCGGAATGGAGCGTCAGCAAAGTGGGCACGGGCATCTGTTTAGTGCGGATCGGGTAGAGGGTAAACTGCTGGTATTTTTTGCTGGCGCTGTCGAATTTGTCGTGGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑TCTTTCCACGGt < 1:60173/237‑1 (MQ=255)
ccttttGCCGTTACGCCCCGACAGCAGCGTCAGTAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCg < 1:365280/235‑1 (MQ=255)
aCGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTAACCGGGATTGATATCCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTGGCCg > 2:953874/1‑238 (MQ=255)
aCGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGGGATCTGCATTTCACCGTGATTGATATGCAGGCCCTGCGTCGCCCCTTCT‑ACTTTCCACGGttgcccg > 2:961518/1‑233 (MQ=255)
aCGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGAACCCGGAGAATTTTTTCGGTGACGGGGTGATATGCATTTCACGGTGATTGCTAGTCAAGCCTGGCGTCACCTCTTCA‑ACTTTCCACGGTTGCCCGt > 1:67766/1‑239 (MQ=255)
cGTTTGCCGTTACGCTCCGACAGCAGCGTTAGCAAAGTGCGCCAGGGCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑a < 2:841153/239‑1 (MQ=255)
ttGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTc < 2:670643/239‑1 (MQ=255)
ttGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGACATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCAGATATTTCTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAATTGGACGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTACCCGTGATTTGTATGCACGGTCTGCGACGCCCCTTCT‑CCTTTCCACGGTTCGCCGT‑ACTc > 1:596412/1‑239 (MQ=255)
tGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGCAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTc > 2:739543/1‑238 (MQ=255)
gTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTccacca < 2:97322/239‑1 (MQ=255)
acggccagcggGGTTAGAAAAGTGCGCAAGGTCATACGTTTATTGGGGATCTGGTAGAGGGTAAACAGCTGATTTTTTTTGCTGGCGCGGTCTAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCg < 1:943241/234‑1 (MQ=255)
cGACAGCAGCGTCAGCAAAGTGCGCCAGGACATACGTTTCTTGCGGAACTGGCAGAGCGTACACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCGTGCGGTAAAAGTGGCAGTACCCGGAGAATTTTTTCGGTGACAAGGCGATTTGCATCTAACCGTGATTGATATGCAGGCTCTCGCTCTCCTCTTCT‑ACTTTACACGGTTCGCCGA‑ACCCACCCACCATccccc > 1:494198/1‑236 (MQ=255)
aCAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGCCGGGGTGATCTGCATTTAACCGGATTTGATATGCAGGCTTGGCTGCGCTCCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTccaccccccaccccggg > 1:561024/1‑230 (MQ=255)
aCAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCCGGCTCTGCGTCGCCCCTTCT‑AATTTCCCCGGTTCCCCGA‑CCCCCCCCAACACCGGCAgg > 1:279479/1‑239 (MQ=255)
aCAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGCAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCGGCGGCGCCTCTGCT‑ACTTTCCACGGTTGGCGGT‑ACCCCACACCCACCCCCAgg > 1:845881/1‑239 (MQ=255)
cagcGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGa > 2:52202/1‑239 (MQ=255)
agcGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGGAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGa < 2:279479/238‑1 (MQ=255)
gTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATTTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCTCCGT‑ACTCACCCACCATCCGCAGGAGGATGTc > 2:589162/1‑239 (MQ=255)
gTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTAACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCAAGGTTCGCCGT‑CCTCCACCACCAACCCCAGGAAGagtgc > 1:23617/1‑235 (MQ=255)
ttatttctttATTTCGTATCTGGTAGACGTTAACCAGCTGATTGTTTTTGCTGGCGCGGTCGAATTGGTCTTTGTGCTTGCGGTAAATGGTGAAGTACCCGGAGAAGTGTTTCGGTGACGAGGTGATCTGCATGTCACCGTGATTGATATGCAGGCTCTGCGTCGGCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCTCTACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCttt < 1:512115/231‑1 (MQ=255)
tACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGt > 2:782203/1‑239 (MQ=255)
acttttATTGCGGTTCTGGTAGGGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCCTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACGTTCCACGGTTCGCCGT‑ACTCCACCACCAGCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGtt < 2:946798/236‑1 (MQ=255)
aCGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCCTCCGCCGGAAGATGTCGTAATCCCGTGCCGCtttacgtt > 1:254341/1‑234 (MQ=255)
aCGTTTAGTTCGGATCTGGTAGAGGGTAAACAGCTTATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTCCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTACGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGtt < 2:845881/239‑1 (MQ=255)
gTTTAGTGCGGATCTGGTAGGGGGTAAACAGCTGATATTTTGTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGcc < 2:917518/227‑1 (MQ=255)
ttATTGCGGATGTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCATTGTGCTTACGGTAAAAGTGGCAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCCTTTCACTGTGGTTGAATTGCAGGCTCTGACTGCCATCTTCT‑GCTTTCCACTGTTCGCCGT‑ACTCCACACCCACCCGCAGGGAAATGTCGaaacgcgtggcacgtatacgttgggg > 1:147495/1‑216 (MQ=255)
tATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGAACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGGGATTGATATGCAGGCCCTGCGTCGCCTCTTCT‑ACTTTCTACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAAATGTCGTAATCCTGTGCGCCTTTCAGTTAggca > 2:988632/1‑237 (MQ=255)
aTTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGACTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGCATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGGCATTGATATGCAGGCTCTGCTTCGCAGCTTCT‑ACTTTCCACGGTTCGCCGG‑ACTCCACCACCAACCCCAGGAAAAACACGTAATCATGTGCCGCTTCCAGTCAGGTa > 1:470115/1‑238 (MQ=255)
gATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGACGTTGTCGAAATCCCGTGCCGCTTTCGGTTcctgactctcat > 1:917518/1‑228 (MQ=255)
gATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaaca > 2:382949/1‑239 (MQ=255)
ttgTAGGGGGTAAACAGTGTATATTTTTTGCGGGCGGGGTCGAATTTTTCTTTGGGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaacaaaca < 1:607052/237‑1 (MQ=255)
ggTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCCCCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaacaaaca > 1:606883/1‑231 (MQ=255)
ggTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCCCCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaacaaaca < 2:606883/231‑1 (MQ=255)
ggTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaacaaaca > 1:427372/1‑231 (MQ=255)
ggTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaacaaaca < 2:427372/231‑1 (MQ=255)
ggTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGGGCCGCTTTCAGTTCGGTATCGAACAAACCCCCTTTGa > 1:820979/1‑239 (MQ=255)
gTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGtt < 1:1007134/157‑1 (MQ=255)
gTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGtt > 2:1007134/1‑157 (MQ=255)
aaCAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGGGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGACGATGTCGTAATCCTGGGCCGCTTTCAGTACAGAAACGAACAAACACACTTTGaaaa > 1:418791/1‑237 (MQ=255)
aaCAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTTTGCCGCTTCCAGTTCGTTATCGAACAACCACTCTTTGAAAc > 2:308310/1‑238 (MQ=255)
aCAGCTGATATTTTTTGCTGGCGCTGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTCCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGc < 2:561024/239‑1 (MQ=255)
cTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGGCACGTGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTAGCCTCTTCT‑CCTTTCCACGGTTCGCCGTCACT‑CACCACCATCCCCAGGAAGTGGTCGTAATCCTGTGCCCACTTCAGTTAGGTCACGAACAAAAACCCTTTAAAAGACCAt > 1:485378/1‑238 (MQ=255)
tGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGTCTCTTCT‑ACTTTCCACGGTTCGCCGtc > 1:808171/1‑154 (MQ=255)
tGATATTTTTTGCTGGCGCGGTCGAATTTGTCTGTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGTCTCTTCT‑ACTTTCCACGGTTCGCCGT‑a < 2:808171/155‑1 (MQ=255)
ttttttttttGCTGGCCTGGTCGAATTTTGTTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTTCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc < 1:981494/235‑1 (MQ=255)
atttgttttGCGTGCGCGTGCGAATTTGTCTTGGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATAGGCAGGGTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGccc < 2:311821/234‑1 (MQ=255)
atatTTTTTCGTGGGGCGGTTGATTTTTTCTTGGTTTTTGGGGAAAAAGCTGAAGTTCCCGGAGTATTTTTTCGGTTGCGAGGTACTCTGCATATACCCGGTGTTCATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCATGGTTCGCCGT‑TCTCCACCACCATCCGCAGGTAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACCCTTTTAAACGCCATGccc < 1:238498/239‑1 (MQ=255)
ttttGGTGGGGCGGTAGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTTATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTa < 1:69035/239‑1 (MQ=255)
ttttGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCCCGGTTCGCCGT‑ACTCCACCACCATACGCAGGCAGCTGTCGTAATCCTGTGCCGCTTTCAGCTCGATATCGAACAAACACCCTTTGAAAAGCCATGccccgaga > 1:38621/1‑234 (MQ=255)
tttGCTGGCGCGGTCGAAGTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGGACCCGGATAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTaa < 2:596412/239‑1 (MQ=255)
gcgtttgattttttttttGTGCTTGCGGTAAAAGTGAAAGTACCCGGAGAATTTTTGCGGTGCCGAGGTGATCTGCATTTCCCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTgg < 1:489165/223‑1 (MQ=255)
ggTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTTCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGtt < 2:797498/238‑1 (MQ=255)
tttGTGCTTGCGGTAAAAGTGGAAGTCCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGc < 2:820979/239‑1 (MQ=255)
ttgttgCTTGCGTGAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGAGCTGCATTTCCCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGc < 2:429194/235‑1 (MQ=255)
tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCtcttct > 1:650709/1‑95 (MQ=255)
tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCtcttct < 2:650709/95‑1 (MQ=255)
tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc > 1:427129/1‑200 (MQ=255)
tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc < 2:427129/200‑1 (MQ=255)
tAAAAGGTGAAGTGCCCGGGGAATTTTGTCGGTGCCGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGGGTCGCCTCTTCT‑ACTTTCCACGGGTCGCCGT‑ACTCCACCACCATCCGCAGGTAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAg < 2:494198/239‑1 (MQ=255)
aaaGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAgg < 2:638619/238‑1 (MQ=255)
cccGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGT‑AAGACCTGGTTGCCAATGATATTGCGTTTGTCGAACAGGCGGCGGGactcag > 2:378710/1‑233 (MQ=255)
ccGGAGAATTTTTTCGGTGGCGGGGTGTACTGCATTTCACCGTGATTTATTTGCAGGCTTTGGCTCCGCCCTTCT‑TCTTTCCCCGGTTCGCCGT‑ACTCCACCCCCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACgg < 1:1006042/239‑1 (MQ=255)
ccGGAGAATTTTTTCGGTGCCGGGGTGTTCTGCCTCTCGCCGTGGTTGATACGCAGGTTCTGCGTTGCCTCTTCT‑ACTGTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTGCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACgg < 2:485378/239‑1 (MQ=255)
ggggtaTTTTTGCGGGGACGGGTTGGTCGCCATTTACCCGTGATTGTATTGCAGGCTGCCCGTCGCCTCTTCG‑CCTTTCCACGGTTCGCCGT‑TCTCCACCCCCAGCCGCAGGAAGATTTCGTAAGCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCg < 1:739543/234‑1 (MQ=255)
ttCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATa < 2:499600/239‑1 (MQ=255)
aTCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCTCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGGTAAGGACCTGGTTGCCAATGATTTTCGGTTTGTAGAAAAGGCGGCGTGAATACGGCGCTTTGGGATACAGGGGccactgta > 1:331730/1‑232 (MQ=255)
gCATTTCCCCTTGACTGGTAGTCAGGCTCTGCGTCCCCTCTTCT‑TCTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGGAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGt < 2:418791/239‑1 (MQ=255)
ccctttCCCCGTGATTGATGTTCCGGATCTGCGTCGCC‑CTGCTCCCTGTCCACGAGTTGTCGT‑ATCCCACCCCCTTCCGCAGGAAGTTGCCGTAAGCCTTTGCCGCTTTCCGTTCGGTATCGAACAAACCCGCTTTGAAACGTCATGCCCG‑TGTAAAGACCTGTTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGTATGAGGCGATTTGGGAGACAGCGGCAAGCTTGCCGGt < 1:665380/236‑1 (MQ=255)
ttCACCGTGATTGATATGCAGGCTCTGCGTAGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTATGCCGCTTTCAGTTCGGTATCGAACAAACCCTCTTTGCACCCCCATGCCCA‑GGAAACAACCTGGTTGCCAATGAAATTGCCTTTGTAGAACAGGCGGCGGGGATACGGGGATTTGGAGGAAAGAGGAAACGTTGCCGGTg‑ggg > 1:124027/1‑239 (MQ=255)
tgattgatATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGACCAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTT‑GGGAATaa > 2:445351/1‑236 (MQ=255)
tgattgatATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGGGGAGAAACGGGGATTTTGGATAAAACGGCAAAGTTGGCGGTG‑GGGAAAAGag > 1:26245/1‑238 (MQ=255)
tgattgatATGCAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGCTTTGGGCTACAGCGGCAAGCTTGCCGGTTGGGGAATAg > 2:664189/1‑238 (MQ=255)
tattgaatgtcAGGCTCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACGCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTT‑GGGAATAGACt < 2:147495/229‑1 (MQ=255)
ttttGCAGGCTCTGCTTCGCCTTTTTT‑TCTTTCCCCGGTTCCCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTT‑GGGAATAGACTTCGcc < 1:445351/236‑1 (MQ=255)
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TTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCT‑ACTTTCCACGGTTCGCCGT‑ACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCA‑GGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTT‑GGGAATAGACTTCGCC > NC_000913/2132557‑2133016
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
