Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F109 I2 R1	11	66.9	2321652	94.7%	2198604	142.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,132,787	A→C	I204S (ATC→AGC)	wcaA ←	putative glycosyl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,132,787	0	A	C	98.1%	161.2 / NA	53	I204S (ATC→AGC)	wcaA	putative glycosyl transferase
Reads supporting (aligned to +/- strand): ref base A (1/0); new base C (23/29); total (24/29)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTT  >  NC_000913/2132652‑2132926

tGGTAGAGGGGAAACCGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGt                                                                                                                                      <  2:762781/143‑1 (MQ=255)

  gtagccggTAAACAGCTGATATCTTTGGCTGGCGCGGGCGAATTTGCCTTGGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGTTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCg                                                                                                                                    <  2:819720/137‑1 (MQ=255)

      agGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGCTCTGCATTTCACCGTGTTTGATATGCAGGCTCTGCGTCGCctc                                                                                                                                >  2:449725/1‑143 (MQ=255)

      agGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCctc                                                                                                                                <  2:1080677/143‑1 (MQ=255)

      agGGTAAACAGCGGAGATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATACAGGCTCTGCGTCGCctc                                                                                                                                <  2:972510/143‑1 (MQ=255)

           taaCCGCTGGTATTTGTTGCTGGCGCGGTCGAGTTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTCCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTa                                                                                                                           <  1:1124471/142‑1 (MQ=255)

           aaaCAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTa                                                                                                                           <  2:204455/143‑1 (MQ=255)

           aaaCAGCTGATATTTTCTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTa                                                                                                                           <  2:137990/143‑1 (MQ=255)

                gCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGTAGAATTTTTTCGGTGACGAAGTGATCTGCATTTCACCGTGATTGATAGGCAGGCTCTGCGTCGCCTCTTCTACttgc                                                                                                                      >  1:401977/1‑141 (MQ=255)

                gCTGATATTTTTTGCTGGCGCGGTAGAATTAGTCTTACTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATGAGCAGGATCTGCGGCGCCTCTTCTAcgtac                                                                                                                      >  1:401670/1‑139 (MQ=255)

                  tGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCa                                                                                                                    >  2:774103/1‑143 (MQ=255)

                           ttGCTGGCGCGGTCGAATTTGGCGTTGTGCGTGCGGCAAAAGTGGAAGTACCCGGAGAATTTTTTCTGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGcc                                                                                                           <  2:492934/143‑1 (MQ=255)

                              cTGGCGCGGTCGAATGTGTCGGTGTGCTTGCGGGAAAAGTGGAAGTGCCCGGAGAATGTTTTCGGTGACGAGGTGATCTGCATGTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACGTTCCACGGTTCGCCGTa                                                                                                        <  2:376512/143‑1 (MQ=255)

                              cTGGCGCGCTCGAATTTGTCTTTGTGCTTGCGGTCAACGTGCAAGTACCCGTATAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTa                                                                                                        <  2:100066/143‑1 (MQ=255)

                               tGGCGCGGTCGACTTTGTCTTTGTGCTTGCGGTAAAGCTAGAAATATTCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTAc                                                                                                       >  2:220697/1‑143 (MQ=255)

                               tGGCGCGGTCGAATTTGTCTGTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGCTTGATCTGCAGGCTCTGCGCCGCCTCTTCTACTTTCCACGGTTCGCCGTAc                                                                                                       <  2:855320/143‑1 (MQ=255)

                                 gcgcGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTc                                                                                                     >  1:1035042/1‑143 (MQ=255)

                                                  tttGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCGACCACCAGCCGCCGGa                                                                                    >  1:818640/1‑143 (MQ=255)

                                                   ttGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGaa                                                                                   <  2:812313/143‑1 (MQ=255)

                                                   tggtgCTTACTGTGAAGGTCGAAGTACCCTGGGAATTTTTTCGGTGACGAGGTGATCTGCATTTCTCCGGGATTGATATGCAGGCTCTGCGTCGCCGCTTCTACTGTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGaa                                                                                   <  1:587597/141‑1 (MQ=255)

                                                    tgtgCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTTCTTTCCACGGTTCGCCATACTTCCTCACCACCAGCAGGaac                                                                                  >  1:687183/1‑142 (MQ=255)

                                                    tgtgCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCGTCCGCAggccg                                                                                  >  2:197304/1‑140 (MQ=255)

                                                    tgtgCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTCCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAg                                                                                  <  2:249764/143‑1 (MQ=255)

                                                              gTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAAt                                                                        >  2:609472/1‑143 (MQ=255)

                                                                 caaGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCt                                                                     <  2:770954/142‑1 (MQ=255)

                                                                    gTGGAAGTACCCGGAGAATTTTTTCGGTGACGGGGTGATCTGCATTTCACCGTGATTGATATGTAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCCTACTCCCCCCCAATCCGCACGACGAGGTCGTAATCCtgtg                                                                  >  1:862012/1‑143 (MQ=255)

                                                                         aggtcctggAGATTTTTTTAGGTGACGAGGTGATCTGCATGTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACGCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCt                                                             <  1:994786/136‑1 (MQ=255)

                                                                           tggccGGAGAATGTGTGCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCttt                                                           <  2:388864/140‑1 (MQ=255)

                                                                                ggAGAATTTTTTCGGTGACGACGTCATCTGCATTTCACCGTGATTGATATGCAAACTCTTCGTCGCCTCTTCTACTTTCCACGCTTCGCCGTAGCTCAACAACATCCGCAGAAAGCTCTGCTAATTCTGTGCCGCtctaccgc                                                      >  1:529200/1‑136 (MQ=255)

                                                                                    aaTTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGt                                                  >  1:639945/1‑143 (MQ=255)

                                                                                      ttttttCGGTGGCGAGCGGATCGGCCTTTCTCGGTGATTGCTATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTAt                                                <  1:904110/143‑1 (MQ=255)

                                                                                       tttttCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCAAGGTTCGCCGTACTCCACCACCATCCGTCGTAAGATGTCGTAATCCTGTCCCGCTTGCAGTGCGGTAta                                               >  1:808651/1‑142 (MQ=255)

                                                                                          ttCGGTGACGAGGTGCTCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACTGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGAAATCGTGTGCCGCTTTCAGTTCGGTATCGaa                                            <  1:413489/143‑1 (MQ=255)

                                                                                              gTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACGCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTGTCGaacaaa                                        >  2:582672/1‑143 (MQ=255)

                                                                                                 aCGAGGTGATCTGCGTTTCACCGTGATTGATATGCCGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCACCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAacac                                     <  1:315835/143‑1 (MQ=255)

                                                                                                   gAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGCTGTCGTAATCCTGTGCCGCTTGCCGTTCGGTACCGaacatacaacc                                   >  2:391785/1‑140 (MQ=255)

                                                                                                   gAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACActc                                   >  2:126654/1‑143 (MQ=255)

                                                                                                    aGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGTCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACActct                                  <  2:608920/143‑1 (MQ=255)

                                                                                                            tGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGGATCGAACAAACACTCTTTGAAACg                          >  2:582600/1‑143 (MQ=255)

                                                                                                            tGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCACAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACg                          >  2:775012/1‑143 (MQ=255)

                                                                                                                    aCCGTGATTGATATGCAGGCGCTGCGTCGCCTCTGCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGccc                  <  2:1122013/143‑1 (MQ=255)

                                                                                                                     ccGTGATTGATGTGCAGGCTCTGCATCGCCTCCTCCACTTTCCACGGTTCTCCGTACTCCACCTCCATCTGCAGGAAGATCGAGCTATCGTGCCTTACCATCACCGCCGCATCGAACAAACACTCTTTGAAACTCCATGCCCa                 <  1:518244/143‑1 (MQ=255)

                                                                                                                     ccGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCACAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcccg                 >  2:388799/1‑142 (MQ=255)

                                                                                                                     ccGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCAACCCCCATCCGCAGGAAGATGTCGTACTCTTGTGCCGCTTTCAGTACGTTATAGAACAAAAACTATATAAAACGACATGccaa                 >  2:135809/1‑141 (MQ=255)

                                                                                                                     ccGTGATTGATATGCAGGCCCTGCCTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCa                 <  2:1016133/143‑1 (MQ=255)

                                                                                                                         gattgatGTGCAGGCTCTGCGTCGCCTCGTCTACTTTCCACGGTTTGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTa             <  1:86823/143‑1 (MQ=255)

                                                                                                                          attgatATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCAACCACCATCCGCAGGAAGATGTCGTAATCCTCTGCCGCTTTCAGTTCGGTATCGCACAACCACTCTTTGCAACGCCATCTCCAGGtca            >  2:680113/1‑141 (MQ=255)

                                                                                                                           ttgatATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAGTCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTaaa           <  2:976620/143‑1 (MQ=255)

                                                                                                                             ggtatGCAGGCTCTGCGTCGCCTCTGCTACTTTCCGCGGTTCGCCGTCCGCCACCACCATCCGCAGGAAGGTGTCGTAATCCTGTGCCGCTTTCAGGTCGGGATCGAACAAACACTCCTCGAGATGCCATGCCCAGGTAAAGa         <  1:1014834/141‑1 (MQ=255)

                                                                                                                             cgtctGCAGGCTCCGCGTCGCCTCCTCTACTTTCCACCGTTCGCCGTACTCCACCACCAGCCGCAGGAAGATGTCGTAACCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACGCTTTGAAACGCCATGCCCAGGTAAAGa         <  2:1050037/139‑1 (MQ=255)

                                                                                                                                atGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCt      >  2:553034/1‑143 (MQ=255)

                                                                                                                                atGCAGGCTCTGCGTCGCCTCTGCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCt      <  2:712619/143‑1 (MQ=255)

                                                                                                                                    aGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGAAAAGACCTGGtt  >  1:1013128/1‑143 (MQ=255)

TGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTT  >  NC_000913/2132652‑2132926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A