Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F78 I0 R1
|
626 |
241.3 |
10389380 |
77.7% |
8072548 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,170,724 |
G→T |
25.4% |
intergenic (‑41/+267) |
gatY ← / ← fbaB |
D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,170,724 | 0 | G | T | 25.4%
| 250.2
/ 29.3
| 183 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (66/61); new base T (34/18); total (100/83) |
| Fisher's exact test for biased strand distribution p-value = 1.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 184 total aligned reads displayed.
TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170575‑2170872
|
tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaa < 1:3014371/150‑1 (MQ=255)
cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa < 2:5075758/150‑1 (MQ=255)
cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAATATAATGaaa > 1:637003/1‑150 (MQ=255)
accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAattatt < 2:761859/150‑1 (MQ=255)
accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAattatt < 1:3915799/150‑1 (MQ=255)
accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAaatatt > 1:4206090/1‑150 (MQ=255)
acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTGt > 2:2954990/1‑150 (MQ=255)
tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATTAAAATAtttttttt > 2:2362424/1‑150 (MQ=255)
gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttttt < 1:3756246/150‑1 (MQ=255)
gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttttt < 2:2673549/150‑1 (MQ=255)
aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTaa > 2:1684028/1‑150 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTtaa > 2:1363413/1‑150 (MQ=255)
gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAata < 1:320442/150‑1 (MQ=255)
gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTAATTGTTTTTAAata > 2:4942689/1‑150 (MQ=255)
ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATATAAAGAAAAAATTTGTTTTTAAatata > 2:4059753/1‑149 (MQ=255)
cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATAga > 2:3704760/1‑150 (MQ=255)
cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTTAATATAga > 2:1156436/1‑150 (MQ=255)
gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTGAAAATATAAATTAAATATTTTTTTTTTAATATagag > 1:98846/1‑150 (MQ=255)
gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgag > 2:402059/1‑150 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgaga < 2:1131649/150‑1 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCgaga > 2:2530264/1‑150 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAAAGAAATTATTTGTTTTTAAATATCgata > 2:3046504/1‑148 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTTAATTATTTTTTTTTTAATATctata > 2:938581/1‑146 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATa < 2:4837478/150‑1 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTTTATATAGatatt > 2:4205422/1‑149 (MQ=255)
tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑a > 2:2843075/1‑150 (MQ=255)
atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAATAAAAAGAAATTATTTGTTTTTAAATATCGAGATAACG‑Ataa > 2:1465453/1‑148 (MQ=255)
tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTAAAAATATAATGTAAATATTTTTTTTTAAATAAAGAGAAAAccaagaa > 1:3128471/1‑144 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATcaca < 1:547227/150‑1 (MQ=255)
aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAAc < 2:2190953/150‑1 (MQ=255)
aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAAc < 1:1336637/150‑1 (MQ=255)
tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACg < 2:2432727/150‑1 (MQ=255)
ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAATATAAATAAAATATTTGTTTTTTTATATAGAGATAAAG‑ATAACAAAAACgcaaa > 1:2516891/1‑146 (MQ=255)
aCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATAACAAAAACGACAatat > 2:417903/1‑150 (MQ=255)
cGCATAACCGCCGCGCTGTGCTTTGTTCAGCATCTGATTTGTCGATACCACTTAAATTTTCATATCCTGTCTTTTGTTTTCTATTTAAAAATATAATTAAATTTTTTTTTTTTAAATTTCGAGATAACT‑AACACAAAAACGACAATATGa < 1:304200/150‑1 (MQ=255)
cGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAAATATTTGTTTTTAAATATAGAGATAACC‑ATCACAAAAACGACAATATGa > 2:4994232/1‑150 (MQ=255)
gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTGGATTTAAAAATATAAATAAAATATTTTTTTTTAAATATAGATATAAAG‑ATAAAAAAAAACACAaaattta > 1:3635208/1‑147 (MQ=255)
gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATAGAGATAACG‑ATCAAAAAAACGACAATATGaa > 2:3389506/1‑150 (MQ=255)
aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCTTATCGTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTTTTTGTTTTTAAATATCGATATAACG‑ATCACAAAAACGACAATATGaaaa < 2:4591408/150‑1 (MQ=255)
aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGTATTTAAAAATATAATTAAATTATTTTTTTTTTAATTTAGAGATAACG‑ATAACAAAaaagaaaaaaagaaaa > 1:4913081/1‑150 (MQ=255)
tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGAATTAAAAAAATAATGAAATAGTTTGTTTTTTAATATAGAGATAACG‑AGCACAAAAACCACAAAAAGAAAat > 1:2552804/1‑150 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAatt < 2:1665530/150‑1 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAatt < 2:4547461/150‑1 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTTAATATAGAGATAACG‑ATAACAAAAAAGGCAAAATGAAAatt > 2:1564740/1‑150 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATAGAGATAAAG‑ATCACAAAAAACACAatatttaaaat > 2:4955890/1‑143 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTAAAAAAAAAAATTAAATATTTTTTTTTTAATATAGAGAAAAAGAAACAAAAAAAC‑ACAATAAGAAAatt > 1:483612/1‑150 (MQ=255)
cgccgcGCTGTGGGTTGTTCATCATCTGCTTTGTCTATACCACGTACATTTTCATAGCCGGTCGTTTGTTTTCGATTTAAAAATATAATGAATTTTTTTGTTTTTAAATTTCGATAAACCG‑ATCAAAAAAACGACAATATGAAAattatt < 2:29411/150‑1 (MQ=255)
gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTc < 2:4859047/150‑1 (MQ=255)
ccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTTAAAAAAAAAATTAAAATATTTTTTTTTAAAAATAGAGATAACC‑ATCAAAAAAAAGACAAAAAGAAAaatattag > 1:4997265/1‑148 (MQ=255)
gcgcTGTGCGTTGTTCAGCATCGGCTTTGTCGATACCACTTACATTTTCATAGCCGGGCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCgag < 2:5005417/150‑1 (MQ=255)
gCGTTGTTCAGCATCTGCTTTGTCTATCCACCGTACATTTTCATAGCCTGTCTTTTGTTTTCGATTACAAAATATAATGAAATTATTTTTTTTTAAATATCGATATAACT‑AACACAAAAACGACAATATGAAAATTATTCGAGGAGTGaa < 1:4100747/150‑1 (MQ=255)
gCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGaa < 2:4079527/150‑1 (MQ=255)
cGTTGTTCAGCATCTGCTGTGTCTATACCCCTTAAATTTTCATATCCGGTCGTTTGTTTCCGATTTCAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGAAAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGaaa < 2:1796984/150‑1 (MQ=255)
ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAAATAAATAAATTATTTTTTTTTAAAAATAGAGATAAAA‑ATAACAAAAACGACAAAATGAAAATTAATAGAGGAGTGaaaag > 2:257113/1‑148 (MQ=255)
agcTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGATATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAAc < 2:655717/148‑1 (MQ=255)
aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAAc < 1:5191285/150‑1 (MQ=255)
cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTAAATATAGATATAAAG‑AAAACAAAAACGACAAAATTTAAATTATTAGAGGAGTGAAATGCAAAAAAAcag > 1:4333883/1‑148 (MQ=255)
tttttggATACCACGTAAATTTTCATATCCTGTATTTTTTTTTCTATTTAAAAATATATTTAATTTTTTTTTTTTTAAATATCTAGATAACT‑ATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTc < 1:854616/144‑1 (MQ=255)
ttGTCGCTACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTcc < 2:167417/150‑1 (MQ=255)
tGTCTATACCACTTACATTTTCATATCCTGTGTTTTTTTTTCTTTTTAAAAATATAATTAAATTTTTTTTTTTTAAATATCTATATAACT‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc < 2:4450142/150‑1 (MQ=255)
tGTCTATACCACTTAAATTTTAATATCCTGTCTTTTGTTTTCTATTAAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACT‑ATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc < 2:1487700/150‑1 (MQ=255)
tGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc < 2:4730164/150‑1 (MQ=255)
ggTCGATCCCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTACAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc < 2:4450735/149‑1 (MQ=255)
tCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATGTTTGAAAAAAAAATTAAAATATTTTTTTTTTAAAATAGAGATTAAG‑AAAACAAAAAAAACAAAATTAAAAATATTAGGGGAGTGAAAGGCAAAAAAAAAGCCAcccca > 1:1715589/1‑148 (MQ=255)
gATACCACTTACTTTTTAATATCCTGTCTTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCTAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa < 2:2411466/150‑1 (MQ=255)
gATACCACGTACTTTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa < 2:2411622/150‑1 (MQ=255)
gATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTGAAAATATAATGAAAATATTTTTTTTTATATTTAGAGTTAAAG‑ATCACAAAAAAGACCAAATTTAAATTATTAGAGGAGTGTAAGGGAAAATAAAGGCCAACCGaga > 2:2455146/1‑148 (MQ=255)
gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTTAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa > 2:3435363/1‑150 (MQ=255)
caattACATTTTAATATCCTTTCGTTTTTTTTCTATTACAAAATATAATCAAATTATTTGTTTTTAAATATCTATATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 1:4196509/146‑1 (MQ=255)
cACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑AAAACAAAAACGACAAAATGAAAATTATTAGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa > 2:4227716/1‑150 (MQ=255)
cGTACAGTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAAATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACCACAAAATGAAAATTATTCGAGGAGTGAAAGGGAAAAAAACGGCCACCCGATAGGGAAGc > 2:198750/1‑150 (MQ=255)
ttACTTTTTCATACCCTGTCTTTTGTTTTCTATTACAAAATATAATTAAATTATTTTTTTTAAAATTTCGTGATAACG‑ATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc < 1:1091433/149‑1 (MQ=255)
taaaTTTTATTAACCTGTCGTTTTTTTTCTATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCTATATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCg < 1:4702978/147‑1 (MQ=255)
cATTTTCATATCCTGTCTTTTGTTTTCTATTTAAAAATATAATTAAATTATTTTTTTTTAAATATCGAGATAACT‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 2:923053/150‑1 (MQ=255)
aTTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGATATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:5089904/150‑1 (MQ=255)
aTTTTCATATCCTGTCGTTTGTTTTCGATTACAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:2234500/150‑1 (MQ=255)
tCATCTCCTGTCTTTTTTTTTCTATTTAAAAATATAATCAAATTATTTTTATTTAATTATCTATATAACT‑AACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaaa < 1:1811907/150‑1 (MQ=255)
tatCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 2:1897269/150‑1 (MQ=255)
tGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgt > 2:4378906/1‑150 (MQ=255)
cGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:3664399/1‑150 (MQ=255)
gtttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 2:4057296/150‑1 (MQ=255)
tttttttCTATTTCAAAATTTTATGAATTTTTTTTTTTTTATATATAGCTTTAACG‑ATCACAAAAACTACAATATGAAAATTATTCGATGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 1:749606/147‑1 (MQ=255)
ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt > 2:3284298/1‑150 (MQ=255)
ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt > 2:677954/1‑150 (MQ=255)
ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc < 2:354691/150‑1 (MQ=255)
ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 2:4151258/1‑150 (MQ=255)
tCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 2:2141637/1‑150 (MQ=255)
cGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:334128/1‑150 (MQ=255)
gATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 1:3730797/1‑150 (MQ=255)
gATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 2:3706744/1‑150 (MQ=255)
ttttAAAAATATAATTAATTTATTTGTTTTTAAATATCGATATACCG‑ATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:1914318/149‑1 (MQ=255)
tttaaaaaaTATAATTAATTTTTTTTTTTTTAAATATCGATATAACG‑AACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:1363413/145‑1 (MQ=255)
tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg < 2:4735872/150‑1 (MQ=255)
tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg > 1:2437163/1‑150 (MQ=255)
tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg < 1:4311935/150‑1 (MQ=255)
aaaaTATAATGAATTTATTTTTTTTTAAATATCGATATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt < 1:4088576/150‑1 (MQ=255)
aaTATAATGAAATTATTTTTTTTTAAATATCGAGATAACG‑ATCACAACAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt < 1:2565942/150‑1 (MQ=255)
taATGAAATTTTTTTTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc < 2:1827203/150‑1 (MQ=255)
aaTGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 1:2517230/1‑150 (MQ=255)
aTGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 2:3609720/1‑150 (MQ=255)
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TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170575‑2170872
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
