Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F342 I0 R1
|
1331 |
225.9 |
7641038 |
95.8% |
7320114 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,170,724 |
G→T |
28.2% |
intergenic (‑41/+267) |
gatY ← / ← fbaB |
D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,170,724 | 0 | G | T | 28.2%
| 368.8
/ 34.8
| 200 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (68/67); new base T (34/22); total (107/93) |
| Fisher's exact test for biased strand distribution p-value = 2.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 204 total aligned reads displayed.
CTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAT > CP009273/2170578‑2170871
|
tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGAGACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGaa < 2:2014895/148‑1 (MQ=255)
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGaaa < 1:1740322/148‑1 (MQ=255)
ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGTTTTAAAAATAT‑AATTAAat > 2:1002909/1‑148 (MQ=255)
ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAat < 2:1584500/148‑1 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAatt < 1:3170390/148‑1 (MQ=255)
ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAattat < 1:527219/148‑1 (MQ=255)
cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAattatt < 2:1140410/148‑1 (MQ=255)
acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTGAAAATAT‑AATGAAATTAttt > 2:2861805/1‑148 (MQ=255)
acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTAttt < 2:2722200/148‑1 (MQ=255)
cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAATAT‑AAAGAAAATATTTg > 2:3599863/1‑148 (MQ=255)
ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGt < 1:403288/148‑1 (MQ=255)
ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGt < 2:2618872/148‑1 (MQ=255)
tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGTTTTTAAAAAAT‑AATTTAAATAtttttt > 1:459686/1‑148 (MQ=255)
cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGtttt < 1:3054965/148‑1 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATAT‑AATTAAAATATttttttttt > 2:2743110/1‑147 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCATTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATAT‑AATGAAATTATTTGTTTTT‑a > 2:3628537/1‑148 (MQ=255)
cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑aa < 1:2582942/148‑1 (MQ=255)
cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑aa < 1:2659265/148‑1 (MQ=255)
cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑aa < 2:1867511/148‑1 (MQ=255)
cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGTTTTTTATTTTAAAAAAA‑AAAAAAAATATttttttttta > 1:329233/1‑146 (MQ=255)
gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑aaa < 1:381888/148‑1 (MQ=255)
tttCGAGATTGTGAATATTGCATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAat < 2:3131282/148‑1 (MQ=255)
ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAAAT‑AATGAAATTATTTTTTTTT‑TAata > 2:2978640/1‑148 (MQ=255)
ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTGAAAAAAA‑AAATAAAATATTTTTTTTT‑TAata > 1:2918342/1‑148 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCga < 2:335999/148‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAATATAAATAAAATTATTT‑TTTTT‑AAATATAgat > 2:821817/1‑147 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCgag < 1:1518731/148‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAAAATagag > 2:2737503/1‑148 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATAT‑AATGAAAATATTTGTTTTT‑AAATATctat > 2:2135214/1‑145 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTTTGTTTTGGATTTCAAAATAT‑AATGAAATTATTTTTTTTT‑AAATATCgag > 2:207761/1‑148 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCgaga < 1:3375811/148‑1 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCgaga < 1:1083454/148‑1 (MQ=255)
tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGTTTTCAAAATAT‑AATTTAATTATTTTTTTTT‑TTatatattgttt > 1:3661593/1‑141 (MQ=255)
tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATa < 2:1353506/148‑1 (MQ=255)
tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAAAA‑AAAGAAAATATTTTTTTTT‑AAATATCGAGATa > 2:1404085/1‑148 (MQ=255)
tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTCAAAAAAT‑AATGTAATTATTTTTTTTT‑AAATATAGAGTTa > 1:952534/1‑148 (MQ=255)
gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACg < 2:224602/148‑1 (MQ=255)
tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATc < 1:3439991/148‑1 (MQ=255)
tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTTGATTTCAAAATAT‑AATGAAATTATTTTTTTTT‑TAATATAGAGATAACCAta > 1:2798327/1‑147 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATca < 2:3609271/148‑1 (MQ=255)
aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATAT‑AATGTAATTATTTTTTTTT‑TAATATCGAGATAAAGATAACaaa > 2:517480/1‑148 (MQ=255)
aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACaaaa < 1:1002909/148‑1 (MQ=255)
gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTGTTTGGGTTTAAAAATAA‑AAATAAATTATTTTTTTTT‑TAATATAGAGATAACGATAACaaaaaa > 1:915509/1‑147 (MQ=255)
gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAAAAT‑AATAAAATTATTTTTTTTT‑TAATATTGAGGTTAAGATaaaaaaaaa > 1:3648489/1‑147 (MQ=255)
aaCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATAT‑AATGAAATTATTTTTTTTT‑AAGAATAGAGATAAAGATAACAAAAAACACaa > 2:1919802/1‑148 (MQ=255)
cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTTAAAATAT‑AATTGAATTATTTTTTTTT‑AAATATAGGGATTAAGATGAAGAAAACCAccaaattt > 1:1579537/1‑141 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTGAAAATAT‑AATGAAATTATTTGTTTTT‑TAATATCGGGATAACGATCACACAAACGACACTATGgaaa > 2:2786636/1‑148 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGATTTGTCGATACCACGTAAATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGATATAACGATCACAAAAACGACAATATGaaaa < 2:2377077/148‑1 (MQ=255)
aaCCGCCGCGCTGTGCGTGGTTAAGAATCTGCTTTGTCGAAACCACTTACTTTTACATCTCCTGGCGTTTTTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGTGATAACTAACACAAACACGACAATATGaaaa < 2:1947946/148‑1 (MQ=255)
gccgcGCTGTGCGTTGTTCAGAATCTGCTTTGTCGATACCCCGAACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATAT‑AATTAATTTATTTGTTTTT‑AAATATCGAGATAACTATCACAAACACGACAATATGAAAattat < 2:1699053/148‑1 (MQ=255)
cTGTGCGTTGTACAGAATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACCATCACAAACACGACAATATGAAAATTATTCgagg < 2:647494/148‑1 (MQ=255)
tgtgCGTTGTTCAGCATCTGCTTGGTCGATACCACGAACATTTTCATATCCGGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgagga < 2:3743191/148‑1 (MQ=255)
tgCGTTGTACAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGt < 2:1537703/148‑1 (MQ=255)
gatctgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCTTTTTTTTTCTATTTAAAAATAT‑AATTAAATTATTTTTTTTT‑AAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTg < 2:23528/144‑1 (MQ=255)
cGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTGAAAAAAT‑AAATAAAATATTTTTTTTT‑TAATATAGAGATAACAAACACAAAAAAAAAAAAAATAAAATTATTAGAGGGGTgt > 1:611044/1‑147 (MQ=255)
gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTGAAAATAT‑AATTTAAATATTTTTTTTT‑AAATATAGAGATAAACATAACAAAAAAGACAATAATAAAAATATTAgaggggggta > 2:3609525/1‑142 (MQ=255)
gtgtttCAGAATCTGCTTTGTCGATACAACTTACATTTTAATATCCTGTCTTTTTTTTTCGTTTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGaa < 2:2592512/144‑1 (MQ=255)
tgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTTAAAATAT‑AAATAAAATATTTTTTTTT‑TAAAATAGAGATAAAGATAACAAAAAACAAAAAATTAAAATTTTTTGAGGGGTTaaaa > 1:2195763/1‑147 (MQ=255)
tgttCAGCATCTGATTTGTCGATCCCCCGTAATTTTTAATATCCTGTCTTTTGTTTTCGATTTAAAAATAT‑AATGAATTTTTTTTTTTTT‑AAATATCGAGATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAg < 1:489561/148‑1 (MQ=255)
ttCTGCTTTGTCTATACAACCTACATTTTAATTTACTTTATTTTTTTTTCCATTTCAAATTTT‑TTTGAAATTATTTGTTTTT‑AATTATCGATAAAACTTTAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaa < 2:1085553/147‑1 (MQ=255)
cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATAT‑AAAGAAAATAATTTTTTTT‑AAATATAGAGATAAACATAAAAAAAAACACAAAAATAAAAAAAATAGAGGAGTTGAATGCaaaaaaaa > 1:635977/1‑147 (MQ=255)
tttGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAAAAA‑AATGAAAATATTTTTTTTT‑AAATAAAGAGAGAACCATCACAAAAACGACAATATGAAAATTATTAGTGGTGTGAAAGGCAAAAAAAAGGcc > 2:1032877/1‑148 (MQ=255)
tttGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAAAAA‑AATTTAAATATTTTTTTTT‑TAAAATCGAGATAAACAACACAAAAACGACAAAATTAAAAATATTAGAGGAGTGAAAGGCaaaaaaaacgcc > 2:88406/1‑143 (MQ=255)
ctaTACCACTTAATTTTTATTATCGTTTTTTTTTTTTTCTATTAAAAAATAT‑AATTAATTTTTTTTTTTTA‑AAATATCTATAAAACGAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCg < 1:2743110/146‑1 (MQ=255)
cACGTAAATTTTCATATCCTGTCTTTTGTTTTCTATTTCAAATTAA‑AATTAATTTTTTTTTTTTA‑AAATATCGATATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAggg < 1:2476639/148‑1 (MQ=255)
ttACTTTTTAATTTCCTTTGTTTTGTTTTGGTTTTAAAATTAT‑ATTTAAATT‑TTTGTTTTTAAAATATCGATATAACTATAAAAAAAACGACAATATGAAAATTATTCGTGGATTGAATGGCAAAAAAACGGCCTCCCGATAGGGAAg < 2:324541/147‑1 (MQ=255)
gTACATTTTAATATCCTGTCGTTTGTTTTCGATTTAAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACTAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg < 2:1164807/148‑1 (MQ=255)
taaaTTTACATACCGTGTCGTTTGTTTTCGTTTTAAAAATAT‑ACTTAAATTTTTGTTTTTT‑AAATATCGATTTAAGTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc < 2:1329769/145‑1 (MQ=255)
aCATTTTCATATCCTGTCGTGTGTTTTAGCTTTAAAAATAT‑AATGAAAATATTTTTTTTT‑AAATATAGAGATAAAGATCACAAAAACGACAATATGGAAAGTATTAGCGGAGGGAAAGGCAAAAAAAAGGCCTCCCGCGAGGGGAGcc > 2:2397784/1‑148 (MQ=255)
taatttCCTGTCTTTTTTTTTCGATTTAAAAATAT‑AATTAAATTATTTTTTTTT‑AAATATCGAGATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCa < 2:3661378/143‑1 (MQ=255)
tCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACTATCACAAAAAAGACAATAAGAAAATTATTCGAGGACTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgt > 2:182477/1‑148 (MQ=255)
cGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 2:175238/148‑1 (MQ=255)
tttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:2316305/1‑148 (MQ=255)
tttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:3578013/1‑148 (MQ=255)
tttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:1166691/1‑148 (MQ=255)
tttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:3783880/1‑148 (MQ=255)
tttttttCTATTTCAAAATAT‑AATCAAATTATTTTTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 2:716906/145‑1 (MQ=255)
ttgtttTCTATTACAAAATAT‑AATCAATTTTTTTTTTTTT‑AAATATCGATATAACCAAAACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 1:90044/148‑1 (MQ=255)
tgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt > 2:3541925/1‑148 (MQ=255)
tttCTATTAAAAAATAT‑ATTTAATTTTTTTTTTTTA‑AAATATCTAAAAAACTACCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt < 1:2952774/148‑1 (MQ=255)
tttCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 2:1994526/1‑148 (MQ=255)
ttCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 2:941755/1‑148 (MQ=255)
ttacAAAATAT‑AAGGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 2:2942819/145‑1 (MQ=255)
ttCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:455547/1‑148 (MQ=255)
ttCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:2127338/1‑148 (MQ=255)
ttCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:45515/1‑148 (MQ=255)
aaaTAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAATCGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:439633/1‑148 (MQ=255)
aaTAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt > 2:3790743/1‑148 (MQ=255)
atat‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg > 1:2033638/1‑148 (MQ=255)
tat‑aATGAAATTATTTGTTTTT‑AAATAACGAGATAACGATCACAAAAACGACAATATGAAATTTATTCGAGGAGTGAAAGGCAAAAAAACTGCCTCACGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTATATGCCGGATGCGgtgt > 2:851679/1‑148 (MQ=255)
at‑aATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 1:1626447/1‑148 (MQ=255)
at‑aATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 1:779224/1‑148 (MQ=255)
at‑aATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 1:1225271/1‑148 (MQ=255)
aaTGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa > 2:44863/1‑148 (MQ=255)
aTGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGTCGGATGCGGTGTAAAc > 2:617561/1‑148 (MQ=255)
aTGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 1:409999/1‑148 (MQ=255)
tGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 2:3053534/1‑148 (MQ=255)
tGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 1:516930/1‑148 (MQ=255)
tGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGAAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 1:1426054/1‑148 (MQ=255)
gAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 2:405145/1‑148 (MQ=255)
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CTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTT‑AAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAT > CP009273/2170578‑2170871
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
