Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F52 I0 R1
|
779 |
320.1 |
10410758 |
96.6% |
10056792 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,170,724 |
G→T |
25.0% |
intergenic (‑41/+267) |
gatY ← / ← fbaB |
D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,170,724 | 0 | G | T | 25.0%
| 370.8
/ 24.5
| 214 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (66/81); new base T (38/23); total (104/110) |
| Fisher's exact test for biased strand distribution p-value = 3.25e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 220 total aligned reads displayed.
TCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170577‑2170872
|
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGATTTCAAAATATAATTAAat > 1:2791061/1‑149 (MQ=255)
ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCTAAATAtaatttaatt > 2:3121645/1‑149 (MQ=255)
ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAatt > 2:1214340/1‑149 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTCGATTTAAAAATATAAAGAAataa > 1:171045/1‑147 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATATAATGTAatta > 1:2975628/1‑149 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATATAAAGAAaata > 1:374466/1‑149 (MQ=255)
cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTTTTTTGAAAAAATAATTTAATTAttt > 1:4408991/1‑149 (MQ=255)
cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGt < 2:3370265/149‑1 (MQ=255)
cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGt < 2:2187812/149‑1 (MQ=255)
cTTGCATCGTTTCGAGATTGTGAATATAGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGt < 1:665690/149‑1 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAAAAAAAATAAAATTTTTTTTTTTaa > 1:5110249/1‑149 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAATTCAAAATATAAAGAAAATATTTTTTTTTaa > 1:3425589/1‑149 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATATAAAAAAATAAATAAATTAATTTTTTTTaa > 1:852405/1‑149 (MQ=255)
gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAat < 2:1340910/149‑1 (MQ=255)
gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTTAAAAAAAAAAAGAAAATATtttttttttatt > 1:1814065/1‑145 (MQ=255)
tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAAAAAAATAAAATATTTTTTTTTTAata > 1:1922983/1‑149 (MQ=255)
ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAatat < 2:2476782/149‑1 (MQ=255)
tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATc < 1:2500430/149‑1 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgag < 2:4152679/149‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgaga < 2:3187392/149‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAATATAATTAAATTATTTTTTTTTTAATATAgaga > 2:2358445/1‑149 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTTAATATAGAGAt > 2:4584286/1‑149 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAAATAAATTATTTTTTTTTAAATATAGAGAt > 2:4615913/1‑149 (MQ=255)
ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATa < 1:4798184/149‑1 (MQ=255)
ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATAGAGATa > 2:2888476/1‑149 (MQ=255)
gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAAc < 1:2855320/149‑1 (MQ=255)
gtgAATAGTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAAc < 2:4236056/149‑1 (MQ=255)
atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGGTTTAAAAAAAAAAAGAAAATAATTTTTTTTAAATATAGACAGAAccaac > 1:2334444/1‑145 (MQ=255)
tatTGACTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 2:3451660/149‑1 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcac < 2:4624176/149‑1 (MQ=255)
ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcaca < 2:2759379/149‑1 (MQ=255)
aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAAATAATTAAATTATTTTTTTTTTAATATATATATAAAGATAACaaaaa > 1:1053007/1‑149 (MQ=255)
tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAAc < 1:5083081/149‑1 (MQ=255)
ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGa < 1:4212126/149‑1 (MQ=255)
ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGa < 1:336491/149‑1 (MQ=255)
ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGa < 2:4254276/149‑1 (MQ=255)
cGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACTTTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACTATCACAAAAACGAc < 2:1500352/149‑1 (MQ=255)
cGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCGGCTTTGTCGATACCACGCACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGAc < 2:3349459/149‑1 (MQ=255)
ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATAAAATTAAAATAATTTTTTTTAAATATCTATATAAAGATAAAAAAAAcaaaa > 1:1054950/1‑145 (MQ=255)
ccGCATAACCGCGGCGGTGTGGGTTGTTCAGCTTCTGATTGGTCTATACCAGGTACTTTTTCTTATCCTGTGTTTTGTTTTCTATTTCAAAATATATTGAATTTTTTTTTTTTTAATTTTGGATATAACGATCACAAAAACGACAatat < 1:4285544/149‑1 (MQ=255)
cGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAAATAATTAAAATATTTTTTTTTAAATATAGAGATAAAGATCACAAAAAACACAAAATg > 2:3597970/1‑149 (MQ=255)
gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTAAATATAGAGATAACGATCACAAAAAAGACAatatta > 2:2561730/1‑147 (MQ=255)
gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAAAATAATGAAATTATTTGTTTTTAAATATAGAGATCAAGATCACAAAAACGCCCCTATGa > 2:4434774/1‑149 (MQ=255)
aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATTAAATTATTTTTTTTTAAATATAGAGATAAAGATAACAAAAACCACAAAATTaaa > 2:2023810/1‑149 (MQ=255)
aaCCGCCGCGGTGTGGGTTGTTCAGCATCTGATTTGTCTATACCACTTAAATTTTCATATCCTGTCTTTTTTTTTCTATTTAAAAATATATTTAATTTATTTTTTTTTAAATATCGAGATAACTATCAAAAAAACGACAATATGAAAat < 1:305825/149‑1 (MQ=255)
ccgccgCGCTGTGCTTTTTTCAGAATCTGCTTTGTCTATACCACGTAAATTTTAATATCCTGTAGTTTGTTTTCTATTTAAAAATATAATCAATTTATTTTTTTTTAAATATCTATATAACGATCACAAAAACGACAATATGAAAatta < 2:137869/149‑1 (MQ=255)
gccgcGCTGTGCGTTTTTCAGCATCTGCTTTGTCTATACCACGAACATTTTCATATCCGGTCGTTTTTTTACTATTTAAAAATATAATTAATTTTTTTTTTTTTAAATTTCGATATAACGATAACAAAAACGACAATATGAAAattatt < 1:1023840/149‑1 (MQ=255)
gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTGAAAATATAAAGAAATTATTTTTTTTTTAATATAGAGATAAAGATCACAAAAAACAAAAAATTAAAaatatt > 1:1235201/1‑149 (MQ=255)
gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAATGAAATTATTTTTTTTTAAATATCGAGATAAAGATAACAAAAACGACAATATTAAAaatatt > 2:1115441/1‑149 (MQ=255)
cgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgag < 2:3209185/149‑1 (MQ=255)
gcTGTGCGTTTTTCAGCATCTGCTTTGTCGATACCACGTAATTTTTCATATCCTGTCGTTTGTTTTCGATTACAAAATATAATGAATTTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgagg < 2:1441089/149‑1 (MQ=255)
gcTGTGCGTTGTTCAGCATCTGCTTTGTCTATACCCCTTACTTTTTAATAGCCTGTCGTTTTTTTTCTATTTCAAAATATAATTAATTTATTTGTTTTTAAATATCTATATAACGATCACAAACACGACAATATGAAAATTATTCgagg < 2:18892/149‑1 (MQ=255)
gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTAAATATAGAGATAAAGATCAAAAAAAAGAAAATATTAAAAATATTAgagg > 2:2681525/1‑149 (MQ=255)
tgtgCGTTGTGCAGCATCTGCTTTGTCGAAACCCCGTACATGTTCATATCCTGACGTTTGTTTTCGATTACAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:2729428/149‑1 (MQ=255)
tgCGTTTTTCAGCAGCTGATTTGTCTATACCACGTACTTTTTCATACCCTGTCTTTTGTTTTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTg < 2:2931138/149‑1 (MQ=255)
tgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTATATTTGAAAATATAATTAAAATATTTTTTTTTTAATTTAGATAGAACGAAAAAAAAAAACACAAAATTAAAAATATTAGTGGAGTg > 1:2720103/1‑149 (MQ=255)
gCGTTGTGCAGCATCTGCTTTGTCGATACCACGTAAATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGa < 2:2423387/149‑1 (MQ=255)
gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAAAAAATAAATTATTTTTTTTTTAATATAAAGATAAAGATAACAAAAAACAAAAAATTAAAAAAATTAGAGGAGTGaaa > 1:2929475/1‑149 (MQ=255)
ttttaccgCATCTGCTTGGTCGATCCCCCGTAATTTTTAATATCCTGTGGTTTGTTTTCGATTTAAAAATATAATTAAATTTTTTTTTTTAAAATATCGATATAACTATAACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAg < 1:134700/142‑1 (MQ=255)
ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTTAAAATATAATGTAAATATTTTTTTTTTAATATGGAGATAAAGATAACAAAAAAGACAAAATTGAAATTATTAGAGGGGTGgaat > 2:2456620/1‑148 (MQ=255)
gttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTGAAAAAATAATTAAATTATTTGTTTTTAAATATAGAGATAACGGTCACAAAAAACAAAATATTAAAATTATTAGAGGTGTGaaattc > 1:1167497/1‑146 (MQ=255)
aTCTGCTTTGTCTATACCCCGACCTTTTTCATATCAGGTCGTTTTTTTTCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 2:4075403/149‑1 (MQ=255)
tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAAATAAATAAATTATTTTTTTTTAAATATAGAGATAACCATCACAAAAACCACAATATGAAAAATATTAGAGGCGTGTAAGGCaaaaaaaa > 2:142939/1‑148 (MQ=255)
tGCTTTGTCTAAACACCTTAATTTTTCATAGCGTGTTTTTTGTTTTCTATTTAAAAATATAATTAATTTTTTTTTTTTTAAATATCGATATAACTATAAAAAAAACGAAAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACgg < 1:155094/149‑1 (MQ=255)
gCTTTGTCGATACCACGTACATATTAATATCCTGTCGTTTGTTTTAGATTTCAAAAAAAAATTAAATTATTTTTTTTTAAAAATCGATATAAAGATCAAAAAAAAGAAAAAATTAAAATTATTATATGAGTGAAAGGaaaaaaaaagtc > 2:2564907/1‑145 (MQ=255)
ccACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAAATAAAATAATTTTTTTTTAATATAGAGATAACGATAAAAAAAAACACAAAATTAAAAAAATTATATGGGTGAAATGCAAAAAAAAAGCCAACCCATAggg > 1:3904573/1‑149 (MQ=255)
cACGTAAATTTACATATCCTGTCGTTTTTTTTATATTTAAAAAAATAATCAAATTATTTTTTTTTAAATATCGTTAAAACTATAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGa < 1:4139335/149‑1 (MQ=255)
aCGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAAATAAAATAATTTTTTTTAAATATAAAGATAAACATAACAAAAAACACAATATTAAAAATATTAGAGGGGTGAAATGCAAAAAAAAAGCCACCCCCGAGGGaa > 2:4019367/1‑149 (MQ=255)
aattttgCATATCCTGTCGTTTGTTTTCGTTTTCAAATTATAATTAAATTATTTGTTTTTAATTTTCGTGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCg < 1:4207826/146‑1 (MQ=255)
aaTTTTCTTACCCTGTGTTTTGTTTTCTATTAAAAAATATATTTAATTTTTTTTTTTTAAAATTGCGATAAACCTAAAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGt < 1:3151604/148‑1 (MQ=255)
aTTTTCATATCCTGTGTTTTGTTTTCTATTACAAAATATAATGAATTTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:4701516/149‑1 (MQ=255)
aTTTACATATCCTGTCTTTTTTTTTCTATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 2:3855353/149‑1 (MQ=255)
tttCATATCCTGTCGTTTTTTTTCTATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATCACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGc < 1:395380/149‑1 (MQ=255)
cATATCCTGTCTTTTGTTTTCTATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCGATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaaa < 2:1053007/149‑1 (MQ=255)
cATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATCAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaaa < 2:3649889/149‑1 (MQ=255)
tatCCTGTCTTTTGTTTTCGATTTCAAAATATAATTAATTTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGt < 1:4147943/149‑1 (MQ=255)
atCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 2:2620382/149‑1 (MQ=255)
tGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTAGAGGAGTGAAAGGCAAAAAAACGGCCACCCGATAGGGAAGCCGTAGCAAAGTGcgcg > 2:2151661/1‑149 (MQ=255)
gTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATAACAAAAACGACAATATGAAAATTATTAGAGGAGTGAAAGGCAAAAAAAAGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgt > 1:2490643/1‑149 (MQ=255)
gTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgt > 2:3556073/1‑149 (MQ=255)
tgttttgttttgtTTTTAAAAATATAATGAAATTATTTGTTTTTAATTATCTAGATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 1:3662808/146‑1 (MQ=255)
tcttttgtttTCTATTAAAAAATATAATTAATTTATTTTTTTTTAAATATCTATATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 1:3663118/146‑1 (MQ=255)
tttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:1981174/1‑149 (MQ=255)
tttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGAGCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 2:1668808/149‑1 (MQ=255)
ttgtttTCTATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 2:3582925/149‑1 (MQ=255)
tgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt > 1:735367/1‑149 (MQ=255)
ttttCTATTTAAAAATATAATAAAATTATTTTTTTTAAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt < 1:5006526/149‑1 (MQ=255)
ttttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:5132746/1‑149 (MQ=255)
tttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAATCGGCCTCCCGATAGGGAAGCCGTAGCACAGTGCGCGTGTTTTTATg > 2:722398/1‑149 (MQ=255)
tttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 1:99878/1‑149 (MQ=255)
tttCGATTACAAAATATAATGAAATTATTTGATTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg < 2:4843224/149‑1 (MQ=255)
ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 2:3984186/1‑149 (MQ=255)
ttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg > 1:2381259/1‑149 (MQ=255)
aaaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:660909/1‑149 (MQ=255)
aaaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:766329/1‑149 (MQ=255)
aaaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 2:1717156/1‑149 (MQ=255)
aaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt > 1:3616809/1‑149 (MQ=255)
tataATTAATTTTTTTTTTTTTAATTAGCTAGAAAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa < 1:1772740/149‑1 (MQ=255)
tataATTAAATTTTTTTTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa < 1:3597933/149‑1 (MQ=255)
ataATTAAATTATTTGTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa < 1:343673/149‑1 (MQ=255)
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TCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170577‑2170872
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
