Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F309 I0 R1
|
1697 |
197.2 |
6627756 |
95.7% |
6342762 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,170,724 |
G→T |
24.2% |
intergenic (‑41/+267) |
gatY ← / ← fbaB |
D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,170,724 | 0 | G | T | 24.2%
| 379.4
/ 18.5
| 195 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (60/72); new base T (26/23); total (88/107) |
| Fisher's exact test for biased strand distribution p-value = 4.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 197 total aligned reads displayed.
CTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAT > CP009273/2170578‑2170871
|
cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGa < 1:1862300/148‑1 (MQ=255)
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGaaa < 1:2742981/148‑1 (MQ=255)
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGaaa < 2:2732481/148‑1 (MQ=255)
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGaaa < 2:444464/148‑1 (MQ=255)
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGaaa < 2:1590621/148‑1 (MQ=255)
accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATAT‑AATTaaa > 2:2948935/1‑148 (MQ=255)
accacaACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCTAAATAT‑AATGaaa < 2:1790820/148‑1 (MQ=255)
ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAat < 1:335910/148‑1 (MQ=255)
ccaccaCTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAAAT‑AATTAAat > 2:1843523/1‑148 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAatt < 1:3159760/148‑1 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAatt < 2:2613769/148‑1 (MQ=255)
accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAatta < 2:1026868/148‑1 (MQ=255)
accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAatta < 1:2510472/148‑1 (MQ=255)
ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTTAAAATAT‑AATTTAattat > 1:1168753/1‑148 (MQ=255)
cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAattatt < 2:2153285/148‑1 (MQ=255)
cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAAAT‑AATGAAattatt > 2:1810191/1‑148 (MQ=255)
cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATAT‑AATGAAattaat > 2:455242/1‑146 (MQ=255)
ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAAT‑AAAGAAAATAttttt > 1:1075843/1‑146 (MQ=255)
tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTAtttttt > 2:501896/1‑148 (MQ=255)
cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTTAAAAAAA‑AATTAAAATAtttttttt > 1:1506801/1‑148 (MQ=255)
cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTaa < 1:695986/148‑1 (MQ=255)
tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAat < 1:1801865/148‑1 (MQ=255)
tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAat < 1:771986/148‑1 (MQ=255)
ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTTAAAAAAA‑AAATTAATTATTTTTTTTtatata > 1:1446873/1‑148 (MQ=255)
tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAatat < 1:3259278/148‑1 (MQ=255)
tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAatat < 1:2087731/148‑1 (MQ=255)
agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTAAAAAAATAAATAAAATAATTTTTTTTTaatttaaa > 1:2301374/1‑142 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCgag < 2:2413471/148‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCgag < 1:3062082/148‑1 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTTATTTAAAAATAA‑AATTAAAATTTTTTTTTTTAAatatataga > 2:881049/1‑143 (MQ=255)
ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTTTTTTTTAATATGGAGAt > 2:1969733/1‑148 (MQ=255)
gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTGAAAATAA‑AAATTAAAAATTTTTTTTTTAATATAGAGATAAcc > 1:2933885/1‑147 (MQ=255)
atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 1:197792/148‑1 (MQ=255)
tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATc < 2:374173/148‑1 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTTAATATAGAGTTAAAGATca > 2:2365009/1‑148 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 1:2613161/148‑1 (MQ=255)
ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGTATTTAAAAATAT‑AATGTAATTATTTGTTTTTTAAAATCGAGATAACCATcaa > 2:1057893/1‑147 (MQ=255)
aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGTTTTGAAAATAT‑AATGAAAATATTTTTTTTTTAATATCGAGATAACGATCACaaa > 2:1037559/1‑148 (MQ=255)
aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa < 1:487979/148‑1 (MQ=255)
tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaaa < 1:1127072/148‑1 (MQ=255)
gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTCGATTTGAAAATAT‑AATGTAATTATTTGTTTTTTAATATAGAGATAAAGATCACAAAAACGACa > 2:1102619/1‑148 (MQ=255)
gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTAAAAATAA‑AATGTAATTATTTTTTTTTAAATATCGAGATAAAGCTCACAAAAACGACAAAATg > 2:328555/1‑148 (MQ=255)
gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAAT‑AAATAAATTATTTTTTTTTTAATATAGAGATAAACATCACAAAAACGAAAAAATg > 2:324667/1‑148 (MQ=255)
aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACTTACTTTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATAT‑AATCAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGaaaa < 2:953093/148‑1 (MQ=255)
acggccgcGGTGTGCGTTGTTCAGAATCTGCTTTTTCTATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATAT‑AATTAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAat < 2:3200557/145‑1 (MQ=255)
cgccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAatta < 2:3017914/148‑1 (MQ=255)
cgccgcGCTGTGCGTTGTTCAGCATCTGCTTGGTCGATACCCCGTACATTTTCATATCCGGACGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAatta < 2:2981850/148‑1 (MQ=255)
gtgGGTTGTTCCGAATATTCTTTTTCTATACCACGTAAATTTTCATATCTTGTGTTTTTTTTTCGATTTAAAAATAT‑AATTAAATTTTTTTTTTTTAAATATCGAGTTAACTATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:1068356/148‑1 (MQ=255)
gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTACATATCCTGTCTTTTGTTTTCTATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGATATAACTATCACAAAAACGACAATATGAAAATTATTCgaggag < 2:1439218/148‑1 (MQ=255)
gCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTAAAAAAAA‑AAATAAAAAATTTTTTTTTTAATATATATATAACGATAACAAAAAAGACAAAAATAAAAATTTTAGATGAGtt > 1:1907568/1‑147 (MQ=255)
ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTTATTTTAAAAAAA‑AATTAAATTATTTTTTTTTTAAAATATAGATAAAAATAACACAAAAAAAAAAAAGAAAAATTTTATAGGGGTGaaa > 1:929884/1‑148 (MQ=255)
ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAAAA‑AAATAAAATAATTTTTTTTAAATATAGAGATAAAGATCACAAAAACGACAAAAAGAAAAATATTGGAGGAGTGcaa > 2:1237016/1‑148 (MQ=255)
tttacAGCATCTGCTTTGTCTAAACCACTTACATTTTCATATCGTGTCGTTTGTTTTCTATTTCAAAATAT‑AATGAAATTTTTTTTTTTTAAATATCGAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAg < 1:520810/144‑1 (MQ=255)
tacAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGc < 2:2183411/146‑1 (MQ=255)
tCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAAATATTTTTTTTTAAATATAGAGATAACGATAACAAAAACGACAATATGTAAAATATTAGAGGTGGGaaatggc > 2:2719528/1‑144 (MQ=255)
agaaTCTGCTTTGTCTATCCCAGCTACTTTTTAATATCCTGTGTTTTTTTTTTGTTTAAAAATTAT‑ATTCAATTTTTTTTTTTTTAAATATCGAGAAAACGTTCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaa < 1:885358/145‑1 (MQ=255)
tCTGCTTTGTCGATACCCCGTACATTTTCATATCGTGTCGTTTTTTTTCTATTAAAAAATAT‑AATCAAATTATTTTTTTTTAAATATCTATATAACGAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 1:1188877/148‑1 (MQ=255)
cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAATAT‑AATTAAATTTTTTTTTTTTAAATATAGAGATAAAGATAACAAAAACTACAAAATTTAAATTTTTAGAGGGGTGAAATGGaaaaaaaa > 2:2859694/1‑147 (MQ=255)
cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTAAAAAAAA‑AATTAAAATATATTTTTTTTAATATAGAGATAAACATAAAAAAAAAGACAAAATAAAAAATTTTGGAGGAGGGGAATGCaaaaaaaa > 2:1977942/1‑147 (MQ=255)
cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGTTTTGAAAATAT‑AATTAAATTATTTTTTTTTTAAATTAGAGTTAAAGATCACAAAAAAGACAATATGTAAATTTTTGGGGGTGGGTAAGGCAAAAAAACGGc > 2:3140523/1‑148 (MQ=255)
cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGTTTTAAAAATAA‑AATGAAATTATTTTTTTTTATATATAGAGATAAAAATAACAAAAACGAAAATAAGAAAATTATAAGAGGAGTGAAAGGCaacaaaaagtc > 2:3139917/1‑144 (MQ=255)
aTACCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTTAAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGAt < 2:114548/148‑1 (MQ=255)
aTACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAAT‑AATTAAAATATTTTTTTTTTAATATAGAGATAAAGATCACAAAAACGACAATATTTAAATTATTAGAGGTGTGAAAGGCAAAAAAACGGCCGCCCGAt > 2:49595/1‑148 (MQ=255)
aCGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAATAT‑AATGAAATTATTTTTTTTTTAATATAGAGATAACGAGAACAAAAACGACCAAATGAAAAAATTTGGAGGGGTGTAAGGCCAAAAATACGCCTCCCGCTAGGGa > 2:2067297/1‑148 (MQ=255)
gTACATTTTCTTATCCTGTCTTTTGTTTTCTATTTAAAATTAT‑AATGAATTTATTTTTTTTTAAATATCGATATAACGATAACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg < 2:1257701/148‑1 (MQ=255)
tACATTTTCATATCCTGTCGTTTGTTTTGGATTTCAAAATAT‑AATTAAAATATTTTTTTTTAAATATCGAGATAACGATAACAAAAAAGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc > 2:776619/1‑148 (MQ=255)
aCATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAATAT‑AAAGAAAATATTTTTTTTTAAATATAGAGAAAACGAACACAAAAACGACAATATTTAAATTATTGGATGTGTGTAATGCAAAAAAAAGGGCGCCCCATAGGGAAGcc > 2:2959517/1‑148 (MQ=255)
tttttCATTGCCTGTGTTTTTTTTTCTTTTAAAAAATAT‑AATAAATTTTTTTTTTTTTAATTATGGATATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGt < 1:532652/147‑1 (MQ=255)
tttCATATCCTGTCGTTTGTTTTCTATTTAAAAATAT‑AATGAAATTATTTTTTTTTAAATATCTAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:2920657/148‑1 (MQ=255)
cagatCCTGTCGTTTGTTTTCTTTTTCAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa < 2:1222041/145‑1 (MQ=255)
tCCTGTTGTTTTTTTTCTTTTAAAAAATAT‑AATTAAATTTTTTTTTTTTAAATATCGATATAACGAAAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 1:501874/148‑1 (MQ=255)
tGTCGTTTTTTTTCTATTAAAAAAAAT‑AATTAATTTTTTTTTTTTTAAATATCGAGAAAACGAACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcgc < 1:979448/148‑1 (MQ=255)
gTCTTTTTTTTAAGATTTAAAAATAT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGcgcg < 2:2301374/148‑1 (MQ=255)
cttttgtttTCTATTACAAAATAT‑AATTAAATTATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg < 1:1663524/146‑1 (MQ=255)
tttttttCTATTAAAAAATAT‑AATAAAATTTTTTTTTTTTAAATATCTATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 1:677110/145‑1 (MQ=255)
ttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:2381717/1‑148 (MQ=255)
ttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:1760082/1‑148 (MQ=255)
ttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:306142/1‑148 (MQ=255)
ttgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:1338473/1‑148 (MQ=255)
tgtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt > 1:1032232/1‑148 (MQ=255)
gtttTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 2:3143954/148‑1 (MQ=255)
tCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 2:1083107/1‑148 (MQ=255)
gATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGGTTTTATGCCg > 2:2191739/1‑148 (MQ=255)
tCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg > 1:2678174/1‑148 (MQ=255)
aaaaaTAT‑AATTAAATTATTTTTTTTTAAATTTCGATATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCTGGATGc < 1:455164/147‑1 (MQ=255)
atat‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg > 1:2426860/1‑148 (MQ=255)
tat‑aATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt > 1:3179505/1‑148 (MQ=255)
tat‑aATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt > 1:2181229/1‑148 (MQ=255)
tat‑aATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGAGAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt > 1:1574305/1‑148 (MQ=255)
tat‑aATCAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtgt < 2:112764/148‑1 (MQ=255)
at‑aATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 1:1393443/1‑148 (MQ=255)
t‑aATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa > 2:2362676/1‑148 (MQ=255)
t‑aATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa > 1:1036655/1‑148 (MQ=255)
t‑aATCAAATTTTTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa < 2:597959/148‑1 (MQ=255)
tactGAAAGTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa < 2:928390/145‑1 (MQ=255)
aTGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 1:3015298/1‑148 (MQ=255)
aTGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 2:94257/1‑148 (MQ=255)
tGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAATGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 2:521341/1‑148 (MQ=255)
tGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 2:611320/1‑148 (MQ=255)
gAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 1:2400866/1‑148 (MQ=255)
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CTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAT > CP009273/2170578‑2170871
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
