Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F78 I0 R1 626 241.3 10389380 77.7% 8072548 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,170,713 C→A 27.9% intergenic (‑30/+278) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,170,7130CA27.9% 284.0 / 34.5 194intergenic (‑30/+278)gatY/fbaBD‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
Reads supporting (aligned to +/- strand):  ref base C (49/75);  new base A (45/16);  total (103/91)
Fisher's exact test for biased strand distribution p-value = 1.14e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 200 total aligned reads displayed.

GTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATG  >  CP009273/2170564‑2170859
                                                                                                                                                     |                                                                                                                                                   
gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTc                                                                                                                                                     <  2:3469104/150‑1 (MQ=255)
gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTc                                                                                                                                                     <  1:3022080/150‑1 (MQ=255)
 ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCa                                                                                                                                                    <  1:4640559/150‑1 (MQ=255)
 ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCa                                                                                                                                                    <  2:3095657/150‑1 (MQ=255)
 ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCa                                                                                                                                                    <  2:3095680/150‑1 (MQ=255)
  tGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTaaa                                                                                                                                                   >  2:649982/1‑150 (MQ=255)
      aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAata                                                                                                                                               <  1:1497834/150‑1 (MQ=255)
      aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGTTTTAaaaaaa                                                                                                                                               >  1:1483802/1‑148 (MQ=255)
         ggTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAATaa                                                                                                                                            >  2:1327290/1‑150 (MQ=255)
          gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAAt                                                                                                                                           <  1:773376/150‑1 (MQ=255)
          gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAAt                                                                                                                                           <  2:4013450/150‑1 (MQ=255)
              cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa                                                                                                                                       <  2:5075758/150‑1 (MQ=255)
              cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGTTTTAAAAATATaaataaa                                                                                                                                       >  1:2629973/1‑145 (MQ=255)
               tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATGaaag                                                                                                                                      >  2:3525824/1‑149 (MQ=255)
                   accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAattatt                                                                                                                                  <  1:3915799/150‑1 (MQ=255)
                   accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAaatatt                                                                                                                                  >  1:4206090/1‑150 (MQ=255)
                     cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTg                                                                                                                                <  2:908908/150‑1 (MQ=255)
                        ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAAATATtttttt                                                                                                                             >  2:1884503/1‑150 (MQ=255)
                          gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttttt                                                                                                                           <  1:3756246/150‑1 (MQ=255)
                            aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTaa                                                                                                                         >  2:1684028/1‑150 (MQ=255)
                              cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAATATAATTAAAATATTTTTTTTTAAat                                                                                                                       >  2:1914318/1‑150 (MQ=255)
                                tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAatat                                                                                                                     <  1:3637281/150‑1 (MQ=255)
                                 ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAATAAATAAAATATTTTTTTTTAAatata                                                                                                                    >  2:4059725/1‑149 (MQ=255)
                                   cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATAga                                                                                                                  >  2:3704782/1‑150 (MQ=255)
                                   cGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATAga                                                                                                                  >  2:3704731/1‑150 (MQ=255)
                                     agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgaga                                                                                                                <  2:1131649/150‑1 (MQ=255)
                                     agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCgaga                                                                                                                >  2:2530264/1‑150 (MQ=255)
                                     agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATAgaga                                                                                                                >  2:1501398/1‑150 (MQ=255)
                                     agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTTAATTATTTTTTTTTTAATATctata                                                                                                                >  2:938581/1‑146 (MQ=255)
                                       aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATa                                                                                                              <  2:4837478/150‑1 (MQ=255)
                                       aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAAATAATTAAATTATTTTTTTTTTAAATTAGAGATa                                                                                                              >  2:1610438/1‑150 (MQ=255)
                                       aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTTTATATAGatatt                                                                                                              >  2:4205422/1‑149 (MQ=255)
                                           tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑a                                                                                                         >  2:2843075/1‑150 (MQ=255)
                                           tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTGAAAATATAATGAAATTATTTGTTTTTATATATCGAGGTAAcca                                                                                                          >  2:122587/1‑148 (MQ=255)
                                                     aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAAc                                                                                               <  2:2190953/150‑1 (MQ=255)
                                                          ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTGAAAATATAATGAAATTATTTGTTTTTTAATATTGCGGTTACG‑ATACAAAAAAAGACaa                                                                                          >  1:3343937/1‑150 (MQ=255)
                                                          ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAAATAATTAAATTATTTGTTTTTTAATTTAGAGATAACG‑ATCACAAAAACggaaa                                                                                          >  1:2517088/1‑146 (MQ=255)
                                                          ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTGAAAATATAAATAAAATATTTTTTTTTTAATATAGAGAGAAAG‑ATAAAAAAAAACACaa                                                                                          >  1:683401/1‑150 (MQ=255)
                                                           gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTGGATTTAAAAAAATAATGAAATTATTTTTTTTTAAATATAGAGATAAAG‑ATAAAAAAAAcaaaaaa                                                                                         >  1:791947/1‑144 (MQ=255)
                                                             aCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATAACAAAAACGACAatat                                                                                       >  2:417903/1‑150 (MQ=255)
                                                              ccGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGAAAAAATg                                                                                      >  2:3746844/1‑150 (MQ=255)
                                                               cGCATAACCGCCGCGCTGTGCTTTGTTCAGCATCTGATTTGTCGATACCACTTAAATTTTCATATCCTGTCTTTTGTTTTCTATTTAAAAATATAATTAAATTTTTTTTTTTTAAATTTCGAGATAACT‑AACACAAAAACGACAATATGa                                                                                     <  1:304200/150‑1 (MQ=255)
                                                               cGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATACAAAGAAATTATTTTTTTTTTAATATAGAGATAACC‑ATCACAAAAACGACAaaatta                                                                                     >  2:548011/1‑148 (MQ=255)
                                                               cGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTAAATATAGAGATAAAG‑ATCAAAAAAACCACAaaatta                                                                                     >  2:4993685/1‑148 (MQ=255)
                                                                gaaTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTACAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGaa                                                                                    <  2:4629619/148‑1 (MQ=255)
                                                                gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATAGAGATAACG‑ATCAAAAAAACGACAATATGaa                                                                                    >  2:3389506/1‑150 (MQ=255)
                                                                  aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGTATTTAAAAATATAATTAAATTATTTTTTTTTTAATTTAGAGATAACG‑ATAACAAAaaagaaaaaaagaaaa                                                                                  >  1:4913081/1‑150 (MQ=255)
                                                                   tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATATAATTAAATTAATTTTTTTTAAAAATAGAGATAAAC‑AAAAAAAAAAAGACAATATGtaaaa                                                                                 >  1:2552838/1‑149 (MQ=255)
                                                                   tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTAAATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGATATAACG‑ATCACAAAAACGACAATATGAAAat                                                                                 <  2:660630/150‑1 (MQ=255)
                                                                    acccgccgCGCTGTGCGTGGTTCAGCATCTGCTTTGTCTATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAatt                                                                                <  2:4547788/148‑1 (MQ=255)
                                                                    aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTAAATATAGAGATTAAG‑ATCACAAAAACCAACATATGaaaaat                                                                                >  2:4068789/1‑148 (MQ=255)
                                                                    aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAatt                                                                                <  2:2577624/150‑1 (MQ=255)
                                                                    aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTAAAAAAAAAAATTAAATATTTTTTTTTTAATATAGAGAAAAAGAAACAAAAAAAC‑ACAATAAGAAAatt                                                                                >  1:483612/1‑150 (MQ=255)
                                                                    aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAATATAAAAATAAATTATTTTTTTTTTAATATAGAGAGTGAG‑ATAAAAAAAAAAACAAAATGAAAata                                                                                >  1:623399/1‑149 (MQ=255)
                                                                       cgccgcGCTGTGGGTTGTTCATCATCTGCTTTGTCTATACCACGTACATTTTCATAGCCGGTCGTTTGTTTTCGATTTAAAAATATAATGAATTTTTTTGTTTTTAAATTTCGATAAACCG‑ATCAAAAAAACGACAATATGAAAattatt                                                                             <  2:29411/150‑1 (MQ=255)
                                                                        gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTAATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTc                                                                            <  2:2430455/150‑1 (MQ=255)
                                                                         ccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTTAAAAAAAAAATTAAAATATTTTTTTTTAAAAATAGAGATAACC‑ATCAAAAAAAAGACAAAAAGAAAaatattag                                                                           >  1:4997265/1‑148 (MQ=255)
                                                                           gcgcTTGGCTTTGTTCAGCTTCTGCTTTGTCGATACCACGTACTTTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATATTGAAATTATTTGTTTTTAAATATCGTGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCgag                                                                         <  2:5005400/150‑1 (MQ=255)
                                                                                 tgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATAGAGATAACG‑ATCACAAAAACCACAATATGAAAATTATTAGAGGAGTGa                                                                   >  2:100118/1‑150 (MQ=255)
                                                                                  gCGTTTTTCACCATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACT‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGaa                                                                  <  2:1483802/150‑1 (MQ=255)
                                                                                  gCGTTGTTCAGCATCTGCTTTGTCTATCCACCGTACATTTTCATAGCCTGTCTTTTGTTTTCGATTACAAAATATAATGAAATTATTTTTTTTTAAATATCGATATAACT‑AACACAAAAACGACAATATGAAAATTATTCGAGGAGTGaa                                                                  <  1:4100747/150‑1 (MQ=255)
                                                                                   ctttttacAGAATCTGTTTTGTCTATCCCCCTTAATTTTTAATACCCTGTCTTTTTTTTTCTTTTACAAAATATAATTAAATTATTTTTTTTTAAATATCTATATAACT‑ATAACAAAAACGACAATATGAAAATTATTCGAGGAGTGaaa                                                                 <  1:932968/143‑1 (MQ=255)
                                                                                   cGTTGTTCAGCATCTGCTGTGTCTATACCCCTTAAATTTTCATATCCGGTCGTTTGTTTCCGATTTCAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGAAAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGaaa                                                                 <  2:1796984/150‑1 (MQ=255)
                                                                                     ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTAAAAATATAATGAAATTATTTGTTTTTTAATATAGAGATTAAG‑ATAACAAAAACGACAATATTAAAATTATTAGATGAGTGAAAgg                                                               >  2:4430569/1‑150 (MQ=255)
                                                                                     ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAAATATTTGTTTTTAAATATAGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTAGAGGAGTGAAAgg                                                               >  2:2995201/1‑150 (MQ=255)
                                                                                     ttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAAAGAAATTAATTTTTTTTAAAAATCAAGATAAAG‑AACACAAAAACCACAAAATTAAAAATATTAGAGGAGTGAAAgg                                                               >  2:257112/1‑150 (MQ=255)
                                                                                          catcATGTGCTTTTTCGATACCACGTAATTTTTCATATCCTGTCTTTTGTTTTCTATTTCAAAATATAATTAATTTATTTTTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaa                                                          <  1:4082257/147‑1 (MQ=255)
                                                                                            gCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTAAAAAAATAAATAAAATATTTTTTTTTTAATATCGATATAAAC‑ATAAAAAAAACCACAAAAAGAAAATAATTAGATGTGTGAAATGCaaaaaa                                                        >  1:3130504/1‑150 (MQ=255)
                                                                                                    tttGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTAAAAATATAAAGAAATTATTTTTTTTTTAAAATAGAGTTAAAG‑ATCACAAAAAAGAAAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAAAGGCCTc                                                >  1:4754450/1‑150 (MQ=255)
                                                                                                     ttGTCGCTACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTcc                                               <  2:167417/150‑1 (MQ=255)
                                                                                                      tGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTAAAAATATAATGAAATTATTTTTTTTAAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc                                              <  2:4730242/150‑1 (MQ=255)
                                                                                                      ggTCGATCCCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTACAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTccc                                              <  2:4450735/149‑1 (MQ=255)
                                                                                                       gTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCg                                             <  2:4336193/150‑1 (MQ=255)
                                                                                                        tCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATGTTTGAAAAAAAAATTAAAATATTTTTTTTTTAAAATAGAGATTAAG‑AAAACAAAAAAAACAAAATTAAAAATATTAGGGGAGTGAAAGGCAAAAAAAAAGCCAcccca                                            >  1:1715589/1‑148 (MQ=255)
                                                                                                          gATACCCCGTACATTTACATATCCTGTCGTTTGTTTTCTATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa                                          <  2:2411473/150‑1 (MQ=255)
                                                                                                          gATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTGAAAATATAATGAAAATATTTTTTTTTATATTTAGAGTTAAAG‑ATCACAAAAAAGACCAAATTTAAATTATTAGAGGAGTGTAAGGGAAAATAAAGGCCAACCGaga                                          >  2:2455146/1‑148 (MQ=255)
                                                                                                          gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTTAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa                                          >  2:3435363/1‑150 (MQ=255)
                                                                                                          gATACCACGTACATTTTCATATCCTGTCGTTGGTTTTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATa                                          <  2:2411460/150‑1 (MQ=255)
                                                                                                               caattACATTTTAATATCCTTTCGTTTTTTTTCTATTACAAAATATAATCAAATTATTTGTTTTTAAATATCTATATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa                                     <  1:4196509/146‑1 (MQ=255)
                                                                                                                  ttACTTTTTCATACCCTGTCTTTTGTTTTCTATTACAAAATATAATTAAATTATTTTTTTTAAAATTTCGTGATAACG‑ATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc                                  <  1:1091433/149‑1 (MQ=255)
                                                                                                                   tACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAATGAAATTATTTTTTTTTTAATATAGGGAGAACG‑ATAACAAAAAAGACAAAATGGAAATTATTAGAGGGGGGGAAGGCAAAAAAAAGGCCGCCCCGGAGGGGAGCCg                                 >  2:2326676/1‑150 (MQ=255)
                                                                                                                     cATTTTCATATCCTGTCTTTTGTTTTCTATTTAAAAATATAATTAAATTATTTTTTTTTAAATATCGAGATAACT‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa                               <  2:923053/150‑1 (MQ=255)
                                                                                                                      aTTTTCATATCCTGTCGTTTGTTTTCGATTACAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg                              <  2:2234500/150‑1 (MQ=255)
                                                                                                                        tttCATACCCTGTCTTTTGTTTTCTATTAAAAAATATAATTAAATTTTTTGTTTTAAAATATCGATATAACT‑ATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCa                            <  1:502251/150‑1 (MQ=255)
                                                                                                                         ttCATATCCTGTCGTTTGTTTTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa                           <  2:4760798/150‑1 (MQ=255)
                                                                                                                          tCATCTCCTGTCTTTTTTTTTCTATTTAAAAATATAATCAAATTATTTTTATTTAATTATCTATATAACT‑AACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaaa                          <  1:1811907/150‑1 (MQ=255)
                                                                                                                          tCATATCCTGTCGTTTGTTTTGGTTTTGAAAATATAATGTAATTATTTTTTTTTAAATATGGCAATTAAG‑ATGACAAAAACGAACAAATGTACAATTTTAGAGGGGTGTAAGGCCAAAAAAAGGCCTACCGAGAGGGGAGCCggtgcaca                          >  2:4942165/1‑143 (MQ=255)
                                                                                                                             tatCCTGTCTTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg                       <  2:4486088/150‑1 (MQ=255)
                                                                                                                                  tGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgt                  >  2:691569/1‑150 (MQ=255)
                                                                                                                                   gTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg                 >  2:1994879/1‑150 (MQ=255)
                                                                                                                                     cGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt               >  1:3664449/1‑150 (MQ=255)
                                                                                                                                     cGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt               >  2:4950602/1‑150 (MQ=255)
                                                                                                                                       tttgtttTCGATTTCAAAATATAATGAATTTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt             <  2:4057063/150‑1 (MQ=255)
                                                                                                                                        ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt            >  2:3284298/1‑150 (MQ=255)
                                                                                                                                           ttttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg         >  2:1366024/1‑150 (MQ=255)
                                                                                                                                             ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc       >  2:4151258/1‑150 (MQ=255)
                                                                                                                                               cGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg     >  1:334106/1‑150 (MQ=255)
                                                                                                                                                 ttttAAAAATATAATTAATTTATTTGTTTTTAAATATCGATATACCG‑ATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt   <  1:1914318/149‑1 (MQ=255)
                                                                                                                                                  tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg  <  1:4311935/150‑1 (MQ=255)
                                                                                                                                                  tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg  >  1:2437163/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACG‑ATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATG  >  CP009273/2170564‑2170859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A