Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,170,713 |
C→A |
26.0% |
intergenic (‑30/+278) |
gatY ← / ← fbaB |
D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,170,713 | 0 | C | A | 26.0%
| 441.4
/ 33.5
| 243 | intergenic (‑30/+278) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base C (62/95); new base A (48/22); total (126/117) |
| Fisher's exact test for biased strand distribution p-value = 5.53e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 246 total aligned reads displayed.
TTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCG > CP009273/2170565‑2170861
|
ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTc < 2:674089/149‑1 (MQ=255)
tGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTCa > 1:2976389/1‑149 (MQ=255)
cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaaa < 1:133867/149‑1 (MQ=255)
aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGAGTTGaaaaa > 1:944690/1‑148 (MQ=255)
cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAatat < 1:583678/149‑1 (MQ=255)
gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTGGATTTAAAAATATaa > 1:1973753/1‑149 (MQ=255)
tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAAt > 2:3192350/1‑149 (MQ=255)
ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATg < 1:4534649/149‑1 (MQ=255)
tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa < 2:293900/149‑1 (MQ=255)
tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa < 2:1905419/149‑1 (MQ=255)
tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATATTTAAAAAAAAAATTaaa > 2:109527/1‑149 (MQ=255)
tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATATaaataaa > 2:1711531/1‑144 (MQ=255)
caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAAAATAATTAAaata > 1:1043749/1‑149 (MQ=255)
ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAattatt < 2:781887/149‑1 (MQ=255)
cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAAATAttt > 2:1250580/1‑149 (MQ=255)
cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGt < 2:1330623/149‑1 (MQ=255)
gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGtttt < 1:1019995/149‑1 (MQ=255)
aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTa > 2:4277941/1‑149 (MQ=255)
aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTCAAAATATAATGAAAATATTTGtttttt > 2:2727391/1‑148 (MQ=255)
aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATAAAATTAAAATATTTTTTTTTa > 1:1940112/1‑149 (MQ=255)
aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTa < 1:3215766/149‑1 (MQ=255)
aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTATATTTAAAAAAATAAATAAAAAATttttttttt > 1:16629/1‑148 (MQ=255)
tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCAGAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaa < 2:4478348/149‑1 (MQ=255)
cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaaa < 2:1349278/149‑1 (MQ=255)
gTTTCGAGAGTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAat < 2:3661378/149‑1 (MQ=255)
tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAAATAATTAAAATAATTTTTTTTaaaaa > 2:4239872/1‑147 (MQ=255)
tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAATTAAAAAAATAAATAAATTATTTTTTTTTTAaaata > 1:3536648/1‑148 (MQ=255)
gtttGTGTATATTGAATGCCGGAACCGCATAACCTCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTAGATACCACGTACATTTTCAGATCCTGTCGTTTGTTTTCGATTTCAAAATATATTGAAATTATTTGTTTTTATATTTCgaga < 2:2419702/147‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgaga < 2:1060409/149‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgaga < 1:2499862/149‑1 (MQ=255)
gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAATTAAAATATTTTTTTTTTAATATAgaga > 1:2933950/1‑149 (MQ=255)
aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGAt < 1:1699283/149‑1 (MQ=255)
tgtgAATATTGAATGCCGGAACCGCATATCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATaa < 2:3335681/149‑1 (MQ=255)
tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTGTTAGATTTAAAAAAATAATGAAATTATTTGTTTTTATATATCgagctca > 1:3729132/1‑145 (MQ=255)
gtgAATTTTGATTGCCGGAACCGCATATCCGCCGCGCTGTGAGTTGTTCAGGATCTGCTTTGTCGATACCACGTACTTTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATTTCGAGATatc < 1:3673453/149‑3 (MQ=255)
gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGa < 1:2242559/149‑1 (MQ=255)
aaTAGTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 2:2497703/149‑1 (MQ=255)
agatTGAATGCCGGATCCGCATAACCGCCGCTCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATc < 2:4430435/147‑1 (MQ=255)
tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 2:2523449/149‑1 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAAATATTTTTTTTTAAATATCGAGATAACGATcac > 2:3961936/1‑149 (MQ=255)
atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATAGAGATAACGATcac > 2:2545603/1‑149 (MQ=255)
ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTTAATTATTTTTTTTTAAATATAGCGATAAAGATaaca > 2:562131/1‑149 (MQ=255)
aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaaa < 2:3236800/149‑1 (MQ=255)
tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACAATCACAAAAAc < 2:960173/149‑1 (MQ=255)
ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGa < 2:1180091/149‑1 (MQ=255)
ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATATTTAAAAATATAAATTAAATATTTTTTTTTAAAAATAGAGATAAAGATCACaaaaaacaca > 1:1145551/1‑144 (MQ=255)
ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTAAAAAAATAATTAAATTATTTTTTTTTAAATATATAGATAAATATAACaaaaaaaaca > 1:743565/1‑144 (MQ=255)
gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTGTTGGATTTGAAAAAATAAATAAAATATTTTTTTTTTTTTATATAGATGAAGATGACAAAAAAAACaa > 1:803882/1‑149 (MQ=255)
aaCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTGAAAATATAATGTAAATATTTTTTTTTAAAAATAGTGATTAAGATAACCAAAACGACaaa > 1:4285796/1‑148 (MQ=255)
acctaaTAACCGCCGCGGTGTGTTTTGTTCTGCTTGTGATTTGTCTATACCACTAACTTTTTAATTTCCTGTGTTTTTTTTTGGTTTTAAAAATATAATTAATTTTTTTTTTTTTAATTATGTATATAACGATCACAAAAACGACAata < 2:4106002/144‑1 (MQ=255)
ccGCATAACCGCCGCGCTGTGGGTTGTTCAGCATCTGATTTGTCTATACCACTTACTTTTTCATATCCTGTGGTTTGTTTTCTATTTCAAAATATAATGAATTTTTTTGTTTTTAATTTTCGAGATAACGATCAAAAACACGACAatat < 2:92515/149‑1 (MQ=255)
aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTTAAAAATATAATTAAAATATTTTTTTTTTAATATAGAGGTAACGATAACAAAAAACACAAAATGaaa > 1:2644220/1‑149 (MQ=255)
tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAATGAAAATATTTTTTTTTAAAAATCGAGATAACGAACAAAAAAAACACAAAAAGaaaa > 2:4100214/1‑149 (MQ=255)
tAACCGCCGCGCTGTGCGTTGTTCAGAATCTGCTTTGTCGATACCACGTAAATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGaaaa < 2:3569567/149‑1 (MQ=255)
ccgccgCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAAAAAAAGAAATTATTTTTTTTTTAATATAGAGATAACGAACACAAAAAAGACAAAAATAAAatta > 1:1540594/1‑149 (MQ=255)
cgccggGGTGTGGGTTGTTCAGCATCTGCTTTGTCGATCCCCCGTAAATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAATATAATTAATTTTTTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAattat < 1:2677480/149‑1 (MQ=255)
cgccgcGCTGTGCTTTTTTCAGAATCTGATTTGTCGATACAACTTAATTTTTAATATCGTGTCTTTTTTTTTCTTTTTCAAATTATAATTAATTTATTTTTTTTTAAATATCTAGATAACGAACAAAAACACGACAATATGAAAattat < 1:1492758/149‑1 (MQ=255)
gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAattatt < 2:1143767/149‑1 (MQ=255)
gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATTAAAATATTTTTTTTTAAATATAGAGATAACCATAACAAAAACCACAAAATGAAAaatatt > 2:1701763/1‑149 (MQ=255)
gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGTTTTCTAAAAATAATGAAAATATTTTTTTTTTAAAATAGAGTTAAAGATAACAAAAAAACCAAAATTGAAATTATTCtagg > 2:805991/1‑149 (MQ=255)
cTGTGGTTTGTCCAGCATCGGCTTTGTCTAAACCACTTACATTTTCATAACCTTTCTTTTTTTTTCTATTAAAAAATATAATCAAATTTTTTTTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCgagga < 1:4718189/149‑1 (MQ=255)
tgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAATATAATTTAATTATTTTTTTTTTAATATAGATATAAAGATCACAAAAAAGACAAAATTGAAATTTTTAGAGGGGTg > 1:2690813/1‑149 (MQ=255)
tCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAATAATGAAATTATTTTTTTTTAAATATAGAGATAAACATAACAAAAACGACAAAATGAAAATTATTAGAGGAGTGGAAGGCaa > 2:4264202/1‑149 (MQ=255)
cAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTTCAAAATATAATTAAATTATTTTTTTTTTAATATATAGATAAAGATAAAAAAAAAGACAAAATTAAAAATATTAGAGGAGTGTAAGTCaaa > 2:2166140/1‑149 (MQ=255)
aGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaa < 2:627677/149‑1 (MQ=255)
aGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTTTTTTAGATTTAAAAAAATAATGTAAATATTTTTTTTTTAAAAAAGAGATAAAAATAACAAAAACAAAAAAATTAAAAATATTGTAGGTGTGGAAGGCcaaa > 1:2270486/1‑149 (MQ=255)
aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAAAAAAATTAAAATATTTTTTTTTTAATATAGAGTTAAAGATCACAAAAAAGAAAATATTAAAAATATTATATGAGTGAAAGGCaaaaaaa > 1:1080140/1‑149 (MQ=255)
aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTTGAAAAAAAAATTAAAAAATTTTTTTTTTAATATAGCGAAAACCATAACAAAAACAAAAAAAATAAAAAAATTAGAGGAGGGAAAAGCacaaaaa > 1:4651389/1‑149 (MQ=255)
cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTAAAAATATAATGAAAATATTTTTTTTTAAATAACGAGATAAAGATAAAAAAAACGACAATATTAAAATTATTAGTGGGGTGAGAGGGaaaaaaaag > 2:3521238/1‑147 (MQ=255)
gCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAAAATAATGAAATTAATTGTTTTTAAATATCGAGATAACCATCACAAAAACCACCATATGAAAATTATTCGAGGAGGGAAATGCCAAAAAAAGGc > 2:1973671/1‑149 (MQ=255)
tttGTCTATACCACGTACATTTTCATATCCTGTGGTTTTTTTTCGATTTAAAAATATAATTAAATTTTTTTTTTTTAAATATCTATATAACGATAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCt < 2:1821303/149‑1 (MQ=255)
tttGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGTTTTAAAAATATAATTTAATTATTTTTTTTTTAATATAGATTTAAACATAAAAAAAAAGAAAATATTTAAATTATTATGGGAGTGGAATGCaaaaaaaaaggct > 2:2080768/1‑143 (MQ=255)
tGTCGAAACCACGTACATTTCAATATCCTGTCGTTTTTTTTCTATTTAAAAATATAATCAAATTATTTTTTTTTAAATATCTAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTcc < 2:32808/149‑1 (MQ=255)
cGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAAAAATGAAATTATTTTTTTTTTAATATAGAGAAAAAGATCAAAAAAAACACAAAATTAAAATTTTTAGAGGTGTGAAAGGCAAAAAAAAGGCCACCCGa > 2:1421696/1‑149 (MQ=255)
ccACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATAGAGATAAAGATAACCAAAACGACAAAATTTAAATTATTGGAGGAGTGGTATGCCAAAAAAATGCCTCCCGCTAggg > 2:2999377/1‑149 (MQ=255)
cACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGTAAATATAATTGAAATATTTGTTTTTTAATATAGAGTTAACGATAGCAAAAAAGACCCTATGAAAATTTTTGGCGGAGTTGTAGGCCACAAAACGGCCGCCCGAGAGGGa > 2:3787194/1‑149 (MQ=255)
aCATTTTCATATCCTGTCGTTTTTTTTTGATTTTAAAATATAATGAAAATATTTTTTTTTAAATATAGAGATAAAGATCACAAAAAACACACTATTAAAATTTTTAGAGGGGTGTAATGCAAAAAAAATGCCGCCCCATATGGCAGccc > 2:1316994/1‑148 (MQ=255)
aTTTTAATATCCTGTCTTTTTTTTTATATTAAAAAATATATTAAAATTATTTTTTTTTAAATATCTATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:3485941/149‑1 (MQ=255)
ttttCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:2648273/149‑1 (MQ=255)
ttCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCa < 1:394402/149‑1 (MQ=255)
tCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg > 2:2991614/1‑149 (MQ=255)
cGTTTGTTTTCTATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATACCGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtgt < 2:1587178/149‑1 (MQ=255)
ttttgtttTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt < 2:532666/148‑1 (MQ=255)
gtttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTTTTCGAGGAGTGGAAGGCAAAATAACGGCCTCCCGAGCGGGGCGCCGTTGCAAAGTGCGCGGGtt > 2:4509539/1‑149 (MQ=255)
gtttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:2300068/1‑149 (MQ=255)
gtttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:2299960/1‑149 (MQ=255)
tttgtttTCTATTAAAAAATATATTTAAATTATTTTTTTTTAAATATCGAGATAACGATCACAACAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 1:330093/149‑1 (MQ=255)
ttgtttTCGTTTTAAAAATTTAATGAAATTTTTTTTTTTTAATTATCGTGATACGGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 1:4167352/149‑1 (MQ=255)
ttgtttTCGATTTCAAAATATAATTAAATTTTTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 2:3303786/149‑1 (MQ=255)
ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt > 1:3997325/1‑149 (MQ=255)
ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGc > 1:3188622/1‑149 (MQ=255)
cGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGACAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCTAAGTGCGCGTGTTTTTATGCCg > 2:3394787/1‑149 (MQ=255)
cGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 2:1108775/1‑149 (MQ=255)
cGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 1:3821961/1‑149 (MQ=255)
cGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 1:2937885/1‑149 (MQ=255)
gATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAACGTGCGCGTGTTTTTATGCCgg > 2:4571753/1‑149 (MQ=255)
gATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:3391221/1‑149 (MQ=255)
tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGACGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGag > 2:2763908/1‑148 (MQ=255)
tCAAAATATAATGAAATTATTTGTTTTTAAATATCGATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc < 1:3448720/149‑1 (MQ=255)
cAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCg < 1:201921/149‑1 (MQ=255)
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TTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCG > CP009273/2170565‑2170861
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
